Last updated on 2025-05-06 20:50:47 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 5.96 | 97.61 | 103.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 3.88 | 67.68 | 71.56 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 174.11 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 183.83 | OK | |||
| r-devel-windows-x86_64 | 1.0.1 | 9.00 | 118.00 | 127.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 7.34 | 93.40 | 100.74 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 5.70 | 91.88 | 97.58 | OK | |
| r-release-macos-arm64 | 1.0.1 | 35.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.1 | 65.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.1 | 9.00 | 121.00 | 130.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 45.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 68.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 10.00 | 150.00 | 160.00 | OK |
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("OhdsiReportGenerator")
Loading required package: OhdsiReportGenerator
Connecting using SQLite driver
<1b>[31m
processing file: assure_study_presentation_multiple.qmd
<1b>[39m<1b>[31moutput file: assure_study_presentation_multiple.knit.md
<1b>[39mClosing database connection
<1b>[1mpandoc <1b>[22m
to: revealjs
output-file: assure_study_presentation_multiple.html
standalone: true
self-contained: true
wrap: none
default-image-extension: png
html-math-method:
method: mathjax
url: >-
https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.9/MathJax.js?config=TeX-AMS_HTML-full
slide-level: 2
variables: {}
<1b>[1mmetadata<1b>[22m
link-citations: true
width: 1050
height: 700
margin: 0.1
center: false
navigationMode: linear
controlsLayout: edges
controlsTutorial: false
hash: true
history: true
hashOneBasedIndex: false
fragmentInURL: false
transition: none
backgroundTransition: none
pdfSeparateFragments: false
lang: en
auto-stretch: true
title: Signal Evaluation Report
scrollable: true
theme:
- default
- presentation_style.scss
logo: img/logo.png
title-slide-attributes:
data-background-color: '#EB1700'
footer: ASSURE Standardized report
slideNumber: true
showSlideNumber: all
menu:
side: left
numbers: true
Error running filter /opt/quarto/share/filters/main.lua:
/opt/quarto/share/filters/main.lua:21750: attempt to index a nil value (field 'tabs')
stack traceback:
/opt/quarto/share/filters/main.lua:935: in function </opt/quarto/share/filters/main.lua:934>
(...tail calls...)
/opt/quarto/share/filters/main.lua:1152: in function </opt/quarto/share/filters/main.lua:1147>
(...tail calls...)
/opt/quarto/share/filters/main.lua:2943: in function </opt/quarto/share/filters/main.lua:2937>
(...tail calls...)
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:34: in upvalue 'run_filter_function'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:223: in function <...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:202>
(...tail calls...)
[C]: in function 'pandoc.List.map'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:125: in upvalue 'recurse'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:222: in local 'jogger'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:98: in upvalue 'recurse'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:222: in function <...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:202>
(...tail calls...)
... (skipping 2 levels)
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:98: in upvalue 'recurse'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:222: in function <...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:202>
(...tail calls...)
[C]: in function 'pandoc.List.map'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:125: in upvalue 'recurse'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:222: in local 'jogger'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:171: in upvalue 'recurse'
...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:222: in function <...uarto/share/pandoc/datadir/../../filters/modules/jog.lua:202>
(...tail calls...)
/opt/quarto/share/filters/main.lua:572: in function </opt/quarto/share/filters/main.lua:550>
(...tail calls...)
/opt/quarto/share/filters/main.lua:1318: in local 'callback'
/opt/quarto/share/filters/main.lua:1336: in upvalue 'run_emulated_filter_chain'
/opt/quarto/share/filters/main.lua:1372: in function </opt/quarto/share/filters/main.lua:1369>
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-Helpers.R:89:1'
• skip prediction report due to odd linux error (1):
'test-PredictionReport.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Generate.R:10:3'): generatePresentationMultiple ────────────────
Error in `quarto::quarto_render(input = file.path(intermediateDir, "presentation",
"assure_study_presentation_multiple.qmd"), execute_params = list(server = server,
username = username, password = password, dbms = dbms, resultsSchema = resultsSchema,
targetId = targetId, targetName = targetName, cmSubsetId = cmSubsetId,
sccsSubsetId = sccsSubsetId, indicationName = indicationName,
outcomeIds = outcomeIds, outcomeNames = outcomeNames, comparatorIds = comparatorIds,
comparatorNames = comparatorNames, covariateIds = covariateIds,
title = title, lead = lead, date = date, details = details,
evaluationText = evaluationText))`: ✖ Error running quarto cli.
Caused by error:
! System command 'quarto' failed
Backtrace:
▆
1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3
2. └─quarto::quarto_render(...)
3. └─quarto:::quarto_run(args, echo = TRUE, quarto_bin = quarto_bin)
4. └─base::tryCatch(...)
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
8. └─cli::cli_abort(msg, call = .call, parent = e)
9. └─rlang::abort(...)
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
Error: Test failures
Execution halted
Closing database connection
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("OhdsiReportGenerator")
Loading required package: OhdsiReportGenerator
Connecting using SQLite driver
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-Helpers.R:89:1'
• skip prediction report due to odd linux error (1):
'test-PredictionReport.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Generate.R:10:3'): generatePresentationMultiple ────────────────
Error in `find_quarto()`: Quarto command-line tools path not found!
Please make sure you have installed and added Quarto to your PATH or set the
QUARTO_PATH environment variable.
Backtrace:
▆
1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3
2. └─quarto::quarto_render(...)
3. └─quarto:::find_quarto()
4. └─cli::cli_abort(quarto_not_found_msg)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
Error: Test failures
Execution halted
Closing database connection
Flavor: r-release-macos-arm64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("OhdsiReportGenerator")
Loading required package: OhdsiReportGenerator
Connecting using SQLite driver
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-Helpers.R:89:1'
• skip prediction report due to odd linux error (1):
'test-PredictionReport.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Generate.R:10:3'): generatePresentationMultiple ────────────────
Error in `find_quarto()`: Quarto command-line tools path not found!
Please make sure you have installed and added Quarto to your PATH or set the
QUARTO_PATH environment variable.
Backtrace:
▆
1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3
2. └─quarto::quarto_render(...)
3. └─quarto:::find_quarto()
4. └─cli::cli_abort(quarto_not_found_msg)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
Error: Test failures
Execution halted
Closing database connection
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("OhdsiReportGenerator")
Loading required package: OhdsiReportGenerator
Connecting using SQLite driver
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-Helpers.R:89:1'
• skip prediction report due to odd linux error (1):
'test-PredictionReport.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Generate.R:10:3'): generatePresentationMultiple ────────────────
Error in `find_quarto()`: Quarto command-line tools path not found!
Please make sure you have installed and added Quarto to your PATH or set the
QUARTO_PATH environment variable.
Backtrace:
▆
1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3
2. └─quarto::quarto_render(...)
3. └─quarto:::find_quarto()
4. └─cli::cli_abort(quarto_not_found_msg)
5. └─rlang::abort(...)
[ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ]
Error: Test failures
Execution halted
Closing database connection
Flavor: r-oldrel-macos-arm64