CRAN Package Check Results for Package JointFPM

Last updated on 2025-09-04 21:49:46 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.3.0	9.91	158.67	168.58	OK
r-devel-linux-x86_64-debian-gcc	1.3.0	7.66	103.25	110.91	ERROR
r-devel-linux-x86_64-fedora-clang	1.3.0			263.29	ERROR
r-devel-linux-x86_64-fedora-gcc	1.3.0			251.02	OK
r-devel-windows-x86_64	1.3.0	10.00	139.00	149.00	OK
r-patched-linux-x86_64	1.3.0	9.81	148.17	157.98	OK
r-release-linux-x86_64	1.3.0	9.52	146.98	156.50	OK
r-release-macos-arm64	1.3.0			63.00	OK
r-release-macos-x86_64	1.3.0			129.00	OK
r-release-windows-x86_64	1.3.0	10.00	144.00	154.00	OK
r-oldrel-macos-arm64	1.3.0			65.00	OK
r-oldrel-macos-x86_64	1.3.0			143.00	OK
r-oldrel-windows-x86_64	1.3.0	13.00	187.00	200.00	OK

Check Details

Version: 1.3.0
Check: examples
Result: ERROR Running examples in ‘JointFPM-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: test_dfs_JointFPM > ### Title: Tests DFs for JointFPMs. > ### Aliases: test_dfs_JointFPM > > ### ** Examples > > # Test different dfs > test_dfs_JointFPM(Surv(time = start, + time2 = stop, + event = event, + type = 'counting') ~ 1, + re_model = ~ pyridoxine + thiotepa, + ce_model = ~ pyridoxine + thiotepa, + re_indicator = "re", + ce_indicator = "ce", + dfs_ce = 1:3, + dfs_re = 2, + tvc_ce_terms = list(thiotepa = 1:2), + tvc_re_terms = list(pyridoxine = 2), + cluster = "id", + data = bladder1_stacked) Error in UseMethod("logLik") : no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Calls: test_dfs_JointFPM ... cbind -> data.frame -> <Anonymous> -> AIC.default -> ll Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [43s/40s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(JointFPM) > > test_check("JointFPM") Starting 2 test processes [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • On CRAN (13): 'test-mean_no.R:2:3', 'test-mean_no.R:17:3', 'test-JointFPM.R:2:3', 'test-JointFPM.R:22:3', 'test-JointFPM.R:42:3', 'test-JointFPM.R:62:3', 'test-JointFPM.R:83:3', 'test-predict.JointFPM.R:2:3', 'test-predict.JointFPM.R:78:3', 'test-predict.JointFPM.R:103:3', 'test-predict.JointFPM.R:130:3', 'test-predict.JointFPM.R:156:3', 'test-predict.JointFPM.R:496:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-test_dfs_JointFPM.R:2:3'): Stable output of test run ─────────── Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Backtrace: ▆ 1. └─testthat::expect_snapshot(...) at test-test_dfs_JointFPM.R:2:3 2. └─rlang::cnd_signal(state$error) ── Error ('test-test_dfs_JointFPM.R:25:5'): Stable output of test run ────────── Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-test_dfs_JointFPM.R:23:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─JointFPM::test_dfs_JointFPM(...) at test-test_dfs_JointFPM.R:25:5 5. └─base::lapply(...) 6. └─JointFPM (local) FUN(X[[i]], ...) 7. └─JointFPM:::test_df(...) 8. ├─base::cbind(out, list(stats::AIC(model$model), stats::BIC(model$model))) 9. │ └─base::cbind(deparse.level, ...) 10. │ └─base::data.frame(..., check.names = FALSE) 11. ├─stats::AIC(model$model) 12. └─stats:::AIC.default(model$model) 13. └─stats (local) ll(object) [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.0
Check: examples
Result: ERROR Running examples in ‘JointFPM-Ex.R’ failed The error most likely occurred in: > ### Name: test_dfs_JointFPM > ### Title: Tests DFs for JointFPMs. > ### Aliases: test_dfs_JointFPM > > ### ** Examples > > # Test different dfs > test_dfs_JointFPM(Surv(time = start, + time2 = stop, + event = event, + type = 'counting') ~ 1, + re_model = ~ pyridoxine + thiotepa, + ce_model = ~ pyridoxine + thiotepa, + re_indicator = "re", + ce_indicator = "ce", + dfs_ce = 1:3, + dfs_re = 2, + tvc_ce_terms = list(thiotepa = 1:2), + tvc_re_terms = list(pyridoxine = 2), + cluster = "id", + data = bladder1_stacked) Error in UseMethod("logLik") : no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Calls: test_dfs_JointFPM ... cbind -> data.frame -> <Anonymous> -> AIC.default -> ll Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [119s/171s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(JointFPM) > > test_check("JointFPM") Starting 2 test processes [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • On CRAN (13): 'test-mean_no.R:2:3', 'test-mean_no.R:17:3', 'test-JointFPM.R:2:3', 'test-JointFPM.R:22:3', 'test-JointFPM.R:42:3', 'test-JointFPM.R:62:3', 'test-JointFPM.R:83:3', 'test-predict.JointFPM.R:2:3', 'test-predict.JointFPM.R:78:3', 'test-predict.JointFPM.R:103:3', 'test-predict.JointFPM.R:130:3', 'test-predict.JointFPM.R:156:3', 'test-predict.JointFPM.R:496:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-test_dfs_JointFPM.R:2:3'): Stable output of test run ─────────── Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Backtrace: ▆ 1. └─testthat::expect_snapshot(...) at test-test_dfs_JointFPM.R:2:3 2. └─rlang::cnd_signal(state$error) ── Error ('test-test_dfs_JointFPM.R:25:5'): Stable output of test run ────────── Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-test_dfs_JointFPM.R:23:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─JointFPM::test_dfs_JointFPM(...) at test-test_dfs_JointFPM.R:25:5 5. └─base::lapply(...) 6. └─JointFPM (local) FUN(X[[i]], ...) 7. └─JointFPM:::test_df(...) 8. ├─base::cbind(out, list(stats::AIC(model$model), stats::BIC(model$model))) 9. │ └─base::cbind(deparse.level, ...) 10. │ └─base::data.frame(..., check.names = FALSE) 11. ├─stats::AIC(model$model) 12. └─stats:::AIC.default(model$model) 13. └─stats (local) ll(object) [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang