Last updated on 2024-11-23 20:48:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.2 | 9.24 | 1162.76 | 1172.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.2 | 5.56 | 858.69 | 864.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.2 | 1877.72 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.2 | 1779.92 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.2 | 11.00 | 699.00 | 710.00 | OK | |
| r-patched-linux-x86_64 | 0.3.2 | 9.38 | 1107.45 | 1116.83 | OK | |
| r-release-linux-x86_64 | 0.3.1 | 5.52 | 1291.22 | 1296.74 | OK | |
| r-release-macos-arm64 | 0.3.2 | 307.00 | NOTE | |||
| r-release-macos-x86_64 | 0.3.2 | 434.00 | NOTE | |||
| r-release-windows-x86_64 | 0.3.2 | 11.00 | 750.00 | 761.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.3.2 | 410.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.3.2 | 513.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.3.2 | 15.00 | 984.00 | 999.00 | NOTE |
Version: 0.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a00_introduction.Rmd’ using rmarkdown
--- finished re-building ‘a00_introduction.Rmd’
--- re-building ‘a01_building_base_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a01_building_base_cohorts.Rmd’
--- re-building ‘a02_cohort_table_requirements.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3779 bytes
Input file size = 4634 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377
Output IDAT size = 3377 bytes (402 bytes decrease)
Output file size = 3455 bytes (1179 bytes = 25.44% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 8 bits/pixel, 252 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3614 bytes
Input file size = 4460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284
Output IDAT size = 3284 bytes (330 bytes decrease)
Output file size = 3362 bytes (1098 bytes = 24.62% decrease)
--- finished re-building ‘a02_cohort_table_requirements.Rmd’
--- re-building ‘a03_require_demographics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a03_require_demographics.Rmd’
--- re-building ‘a04_require_intersections.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a04_require_intersections.Rmd’
--- re-building ‘a05_update_cohort_start_end.Rmd’ using rmarkdown
--- finished re-building ‘a05_update_cohort_start_end.Rmd’
--- re-building ‘a06_concatanate_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a06_concatanate_cohorts.Rmd’
--- re-building ‘a07_filter_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a07_filter_cohorts.Rmd’
--- re-building ‘a08_split_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a08_split_cohorts.Rmd’
--- re-building ‘a09_combine_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a09_combine_cohorts.Rmd’
--- re-building ‘a10_match_cohorts.Rmd’ using rmarkdown
--- finished re-building ‘a10_match_cohorts.Rmd’
--- re-building ‘a11_benchmark.Rmd’ using rmarkdown
Quitting from lines 124-137 [unnamed-chunk-5] (a11_benchmark.Rmd)
Error: processing vignette 'a11_benchmark.Rmd' failed with diagnostics:
The size of `nm` (2) must be compatible with the size of `x` (0).
--- failed re-building ‘a11_benchmark.Rmd’
SUMMARY: processing the following file failed:
‘a11_benchmark.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a00_introduction.Rmd’ using rmarkdown
--- finished re-building ‘a00_introduction.Rmd’
--- re-building ‘a01_building_base_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a01_building_base_cohorts.Rmd’
--- re-building ‘a02_cohort_table_requirements.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
** Processing: /data/gannet/ripley/R/packages/tests-clang/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3779 bytes
Input file size = 4634 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377
Output IDAT size = 3377 bytes (402 bytes decrease)
Output file size = 3455 bytes (1179 bytes = 25.44% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 8 bits/pixel, 252 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3614 bytes
Input file size = 4460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284
Output IDAT size = 3284 bytes (330 bytes decrease)
Output file size = 3362 bytes (1098 bytes = 24.62% decrease)
--- finished re-building ‘a02_cohort_table_requirements.Rmd’
--- re-building ‘a03_require_demographics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a03_require_demographics.Rmd’
--- re-building ‘a04_require_intersections.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a04_require_intersections.Rmd’
--- re-building ‘a05_update_cohort_start_end.Rmd’ using rmarkdown
--- finished re-building ‘a05_update_cohort_start_end.Rmd’
--- re-building ‘a06_concatanate_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a06_concatanate_cohorts.Rmd’
--- re-building ‘a07_filter_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a07_filter_cohorts.Rmd’
--- re-building ‘a08_split_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a08_split_cohorts.Rmd’
--- re-building ‘a09_combine_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a09_combine_cohorts.Rmd’
--- re-building ‘a10_match_cohorts.Rmd’ using rmarkdown
--- finished re-building ‘a10_match_cohorts.Rmd’
--- re-building ‘a11_benchmark.Rmd’ using rmarkdown
Quitting from lines 124-137 [unnamed-chunk-5] (a11_benchmark.Rmd)
Error: processing vignette 'a11_benchmark.Rmd' failed with diagnostics:
The size of `nm` (2) must be compatible with the size of `x` (0).
--- failed re-building ‘a11_benchmark.Rmd’
SUMMARY: processing the following file failed:
‘a11_benchmark.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a00_introduction.Rmd’ using rmarkdown
--- finished re-building ‘a00_introduction.Rmd’
--- re-building ‘a01_building_base_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a01_building_base_cohorts.Rmd’
--- re-building ‘a02_cohort_table_requirements.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
** Processing: /data/gannet/ripley/R/packages/tests-devel/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3779 bytes
Input file size = 4634 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3377
Output IDAT size = 3377 bytes (402 bytes decrease)
Output file size = 3455 bytes (1179 bytes = 25.44% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/CohortConstructor.Rcheck/vign_test/CohortConstructor/vignettes/a02_cohort_table_requirements_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 8 bits/pixel, 252 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3614 bytes
Input file size = 4460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3284
Output IDAT size = 3284 bytes (330 bytes decrease)
Output file size = 3362 bytes (1098 bytes = 24.62% decrease)
--- finished re-building ‘a02_cohort_table_requirements.Rmd’
--- re-building ‘a03_require_demographics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a03_require_demographics.Rmd’
--- re-building ‘a04_require_intersections.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a04_require_intersections.Rmd’
--- re-building ‘a05_update_cohort_start_end.Rmd’ using rmarkdown
--- finished re-building ‘a05_update_cohort_start_end.Rmd’
--- re-building ‘a06_concatanate_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a06_concatanate_cohorts.Rmd’
--- re-building ‘a07_filter_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a07_filter_cohorts.Rmd’
--- re-building ‘a08_split_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a08_split_cohorts.Rmd’
--- re-building ‘a09_combine_cohorts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘a09_combine_cohorts.Rmd’
--- re-building ‘a10_match_cohorts.Rmd’ using rmarkdown
--- finished re-building ‘a10_match_cohorts.Rmd’
--- re-building ‘a11_benchmark.Rmd’ using rmarkdown
Quitting from lines 124-137 [unnamed-chunk-5] (a11_benchmark.Rmd)
Error: processing vignette 'a11_benchmark.Rmd' failed with diagnostics:
The size of `nm` (2) must be compatible with the size of `x` (0).
--- failed re-building ‘a11_benchmark.Rmd’
SUMMARY: processing the following file failed:
‘a11_benchmark.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.2
Check: installed package size
Result: NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
doc 9.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64