Last updated on 2026-08-01 20:50:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 2.47 | 125.87 | 128.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 1.94 | 94.12 | 96.06 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 200.07 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 94.26 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 6.00 | 192.00 | 198.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 3.02 | 91.42 | 94.44 | ERROR | |
| r-release-linux-x86_64 | 0.1.3 | 2.44 | 82.91 | 85.35 | ERROR | |
| r-release-macos-arm64 | 0.1.3 | 1.00 | 82.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 2.00 | 223.00 | 225.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 5.00 | 202.00 | 207.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | 1.00 | 84.00 | 85.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.3 | 2.00 | 157.00 | 159.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 8.00 | 195.00 | 203.00 | ERROR |
Version: 0.1.3
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0B5HaT’ ‘~/tmp/scratch/Rtmp1TK0wP’
‘~/tmp/scratch/Rtmp1ZznE3’ ‘~/tmp/scratch/Rtmp2unhnc’
‘~/tmp/scratch/Rtmp3IkQvQ’ ‘~/tmp/scratch/Rtmp3TU69W’
‘~/tmp/scratch/Rtmp4kDTXR’ ‘~/tmp/scratch/Rtmp59k6gI’
‘~/tmp/scratch/Rtmp5gAD82’ ‘~/tmp/scratch/Rtmp5jCqyU’
‘~/tmp/scratch/Rtmp5oPAat’ ‘~/tmp/scratch/Rtmp60icxR’
‘~/tmp/scratch/Rtmp65haVY’ ‘~/tmp/scratch/Rtmp6Iz7xH’
‘~/tmp/scratch/Rtmp6Va5rQ’ ‘~/tmp/scratch/Rtmp6rL1kV’
‘~/tmp/scratch/Rtmp708XD2’ ‘~/tmp/scratch/Rtmp8QWlnR’
‘~/tmp/scratch/Rtmp8jqoU7’ ‘~/tmp/scratch/Rtmp8xdv7q’
‘~/tmp/scratch/Rtmp9AaaKH’ ‘~/tmp/scratch/Rtmp9aLUxF’
‘~/tmp/scratch/Rtmp9hetOp’ ‘~/tmp/scratch/RtmpA9zfks’
‘~/tmp/scratch/RtmpAKTuIG’ ‘~/tmp/scratch/RtmpAbuEiC’
‘~/tmp/scratch/RtmpB3cWQW’ ‘~/tmp/scratch/RtmpBJ12zM’
‘~/tmp/scratch/RtmpBb72dj’ ‘~/tmp/scratch/RtmpBnWwIj’
‘~/tmp/scratch/RtmpCGrRM9’ ‘~/tmp/scratch/RtmpCZJCDG’
‘~/tmp/scratch/RtmpCltYJ3’ ‘~/tmp/scratch/RtmpD4LPMp’
‘~/tmp/scratch/RtmpDRbpnB’ ‘~/tmp/scratch/RtmpDci03l’
‘~/tmp/scratch/RtmpDdYpJA’ ‘~/tmp/scratch/RtmpDoofdj’
‘~/tmp/scratch/RtmpDtD2qJ’ ‘~/tmp/scratch/RtmpFC3LRi’
‘~/tmp/scratch/RtmpGDI5tA’ ‘~/tmp/scratch/RtmpGEp1FR’
‘~/tmp/scratch/RtmpGFl18B’ ‘~/tmp/scratch/RtmpGNKj6q’
‘~/tmp/scratch/RtmpGQXxB1’ ‘~/tmp/scratch/RtmpGhLGCq’
‘~/tmp/scratch/RtmpGurQ2N’ ‘~/tmp/scratch/RtmpHE9D7o’
‘~/tmp/scratch/RtmpHHpRxY’ ‘~/tmp/scratch/RtmpIfLPhW’
‘~/tmp/scratch/RtmpIfWoJg’ ‘~/tmp/scratch/RtmpIxDrhK’
‘~/tmp/scratch/RtmpJTTADE’ ‘~/tmp/scratch/RtmpJcf9dD’
‘~/tmp/scratch/RtmpKpnjyz’ ‘~/tmp/scratch/RtmpL8KZuR’
‘~/tmp/scratch/RtmpLEr7Lg’ ‘~/tmp/scratch/RtmpNsTe1j’
‘~/tmp/scratch/RtmpOaOxsu’ ‘~/tmp/scratch/RtmpOm71Fs’
‘~/tmp/scratch/RtmpPrmZKz’ ‘~/tmp/scratch/RtmpQS9BB6’
‘~/tmp/scratch/RtmpRJUvX8’ ‘~/tmp/scratch/RtmpRLLtdx’
‘~/tmp/scratch/RtmpS4OAQM’ ‘~/tmp/scratch/RtmpSMyDRA’
‘~/tmp/scratch/RtmpSl8fgr’ ‘~/tmp/scratch/RtmpSqJxYT’
‘~/tmp/scratch/RtmpSvhaw4’ ‘~/tmp/scratch/RtmpT2iagM’
‘~/tmp/scratch/RtmpUcA8yK’ ‘~/tmp/scratch/RtmpUcpIAq’
‘~/tmp/scratch/RtmpUqtJKT’ ‘~/tmp/scratch/RtmpV7kHlT’
‘~/tmp/scratch/RtmpW8RUYl’ ‘~/tmp/scratch/RtmpWp0IFs’
‘~/tmp/scratch/RtmpX6sb4z’ ‘~/tmp/scratch/RtmpY44OXk’
‘~/tmp/scratch/RtmpYKEWc6’ ‘~/tmp/scratch/RtmpZddJPw’
‘~/tmp/scratch/RtmpabEiux’ ‘~/tmp/scratch/RtmpaiA4bJ’
‘~/tmp/scratch/RtmpanVko6’ ‘~/tmp/scratch/RtmpayKOo9’
‘~/tmp/scratch/Rtmpc8Dzrp’ ‘~/tmp/scratch/Rtmpc9yfZZ’
‘~/tmp/scratch/Rtmpd9F9Sf’ ‘~/tmp/scratch/RtmpdB6Evw’
‘~/tmp/scratch/RtmpdKT5pF’ ‘~/tmp/scratch/RtmpeDxJ7H’
‘~/tmp/scratch/RtmpeLguYO’ ‘~/tmp/scratch/RtmpeNgDzU’
‘~/tmp/scratch/RtmpeQ25kq’ ‘~/tmp/scratch/Rtmpf6UPwr’
‘~/tmp/scratch/RtmpfnNDte’ ‘~/tmp/scratch/RtmpfsbegQ’
‘~/tmp/scratch/RtmpfybFfd’ ‘~/tmp/scratch/RtmpgqmXx2’
‘~/tmp/scratch/RtmphyZi5a’ ‘~/tmp/scratch/RtmpinVEN7’
‘~/tmp/scratch/RtmpizIdKL’ ‘~/tmp/scratch/RtmpjALdjw’
‘~/tmp/scratch/RtmpjwYvZH’ ‘~/tmp/scratch/Rtmpk4XBES’
‘~/tmp/scratch/Rtmpk6UtWi’ ‘~/tmp/scratch/Rtmpl8d4l5’
‘~/tmp/scratch/RtmplaMIQV’ ‘~/tmp/scratch/RtmplgvlbF’
‘~/tmp/scratch/Rtmpm129II’ ‘~/tmp/scratch/RtmpmmNtyF’
‘~/tmp/scratch/Rtmpmph4eD’ ‘~/tmp/scratch/RtmpnAnBYW’
‘~/tmp/scratch/Rtmpnc4u3r’ ‘~/tmp/scratch/Rtmpp4FDEb’
‘~/tmp/scratch/Rtmpp9wW6S’ ‘~/tmp/scratch/RtmppA2FWz’
‘~/tmp/scratch/Rtmppvrnrb’ ‘~/tmp/scratch/Rtmpq1CJ6K’
‘~/tmp/scratch/RtmpqJfd5S’ ‘~/tmp/scratch/RtmpqMMtm3’
‘~/tmp/scratch/Rtmpr9cXun’ ‘~/tmp/scratch/RtmprH0ghO’
‘~/tmp/scratch/RtmprJKBfj’ ‘~/tmp/scratch/RtmprRkzZa’
‘~/tmp/scratch/RtmprcF7Gt’ ‘~/tmp/scratch/Rtmprot5YE’
‘~/tmp/scratch/RtmpsW2FKz’ ‘~/tmp/scratch/Rtmpu3jdbx’
‘~/tmp/scratch/Rtmpu3vsY7’ ‘~/tmp/scratch/RtmpuI4bAZ’
‘~/tmp/scratch/RtmpvN0ZoA’ ‘~/tmp/scratch/RtmpvQOFIu’
‘~/tmp/scratch/RtmpvRYRI1’ ‘~/tmp/scratch/Rtmpvddcgn’
‘~/tmp/scratch/Rtmpw59AeA’ ‘~/tmp/scratch/RtmpwTYm9V’
‘~/tmp/scratch/Rtmpwb2o79’ ‘~/tmp/scratch/RtmpxFUn41’
‘~/tmp/scratch/RtmpyOLqVm’ ‘~/tmp/scratch/RtmpyspPHa’
‘~/tmp/scratch/Rtmpz0DEnG’ ‘~/tmp/scratch/RtmpzHn6yO’
‘~/tmp/scratch/Rtmpztb5u6’ ‘~/tmp/scratch/cci4l2q7.s’
‘~/tmp/scratch/quarto-session834fdbf9e88f5e2a’
‘~/tmp/scratch/xvfb-run.15sekf’ ‘~/tmp/scratch/xvfb-run.1Eyq1c’
‘~/tmp/scratch/xvfb-run.1PizkC’ ‘~/tmp/scratch/xvfb-run.2E51sI’
‘~/tmp/scratch/xvfb-run.3edjqF’ ‘~/tmp/scratch/xvfb-run.41cgHi’
‘~/tmp/scratch/xvfb-run.5SnwCb’ ‘~/tmp/scratch/xvfb-run.6TjOJU’
‘~/tmp/scratch/xvfb-run.7IzS62’ ‘~/tmp/scratch/xvfb-run.8SUbUR’
‘~/tmp/scratch/xvfb-run.8mcTpU’ ‘~/tmp/scratch/xvfb-run.9Ierbl’
‘~/tmp/scratch/xvfb-run.A1iljF’ ‘~/tmp/scratch/xvfb-run.AugzSV’
‘~/tmp/scratch/xvfb-run.BEuxV5’ ‘~/tmp/scratch/xvfb-run.BuKgBS’
‘~/tmp/scratch/xvfb-run.FNlGwz’ ‘~/tmp/scratch/xvfb-run.FZzIfX’
‘~/tmp/scratch/xvfb-run.FyYMI8’ ‘~/tmp/scratch/xvfb-run.FzttkH’
‘~/tmp/scratch/xvfb-run.Gvd6p1’ ‘~/tmp/scratch/xvfb-run.GwjExD’
‘~/tmp/scratch/xvfb-run.HwLbFr’ ‘~/tmp/scratch/xvfb-run.IbVrHT’
‘~/tmp/scratch/xvfb-run.JCQCLw’ ‘~/tmp/scratch/xvfb-run.Jl1DqT’
‘~/tmp/scratch/xvfb-run.JsuFMJ’ ‘~/tmp/scratch/xvfb-run.KyeE5b’
‘~/tmp/scratch/xvfb-run.NCXJUx’ ‘~/tmp/scratch/xvfb-run.OFj1xC’
‘~/tmp/scratch/xvfb-run.QzOVir’ ‘~/tmp/scratch/xvfb-run.SOmVt6’
‘~/tmp/scratch/xvfb-run.Sjo3SL’ ‘~/tmp/scratch/xvfb-run.V8YA90’
‘~/tmp/scratch/xvfb-run.VD5GIT’ ‘~/tmp/scratch/xvfb-run.WoSeRk’
‘~/tmp/scratch/xvfb-run.Y8AOIK’ ‘~/tmp/scratch/xvfb-run.YvllKi’
‘~/tmp/scratch/xvfb-run.ZwdDG8’ ‘~/tmp/scratch/xvfb-run.bCW1aD’
‘~/tmp/scratch/xvfb-run.bu0odc’ ‘~/tmp/scratch/xvfb-run.cU0EeX’
‘~/tmp/scratch/xvfb-run.ch9tW9’ ‘~/tmp/scratch/xvfb-run.d6TlVm’
‘~/tmp/scratch/xvfb-run.i1rJaz’ ‘~/tmp/scratch/xvfb-run.jRsjhS’
‘~/tmp/scratch/xvfb-run.jUOwfY’ ‘~/tmp/scratch/xvfb-run.l2I3c6’
‘~/tmp/scratch/xvfb-run.lLAD38’ ‘~/tmp/scratch/xvfb-run.mxN53u’
‘~/tmp/scratch/xvfb-run.nA2Jlj’ ‘~/tmp/scratch/xvfb-run.o5jdk5’
‘~/tmp/scratch/xvfb-run.oS9hvH’ ‘~/tmp/scratch/xvfb-run.oegc70’
‘~/tmp/scratch/xvfb-run.px3Xt0’ ‘~/tmp/scratch/xvfb-run.qMeAiO’
‘~/tmp/scratch/xvfb-run.rdLCG5’ ‘~/tmp/scratch/xvfb-run.rtUAvE’
‘~/tmp/scratch/xvfb-run.sARSAr’ ‘~/tmp/scratch/xvfb-run.tT1f4y’
‘~/tmp/scratch/xvfb-run.tZTdwR’ ‘~/tmp/scratch/xvfb-run.xNXZn0’
‘~/tmp/scratch/xvfb-run.zDynyh’ ‘~/tmp/scratch/xvfb-run.zIjWqp’
‘~/tmp/scratch/xvfb-run.zNUudr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
--- finished re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following file failed:
‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
Quitting from bioutils-case-study.Rmd:72-76 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─BioUtils::load.geo.soft("", "GDS507", log.transform = TRUE)
2. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
3. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
4. └─GEOquery:::downloadFile(myurl, destfile, mode)
5. ├─base::tryCatch(...)
6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
9. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioutils-case-study.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
--- finished re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following file failed:
‘bioutils-case-study.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'bioutils-case-study.Rmd' using rmarkdown
Warning: stack imbalance in '<-', 65 then 67
Warning: stack imbalance in 'withVisible', 59 then 61
--- finished re-building 'bioutils-case-study.Rmd'
--- re-building 'rcc-visual-analytics.Rmd' using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1063310 bytes missing
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1063310 bytes missing
--- failed re-building 'rcc-visual-analytics.Rmd'
SUMMARY: processing the following file failed:
'rcc-visual-analytics.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64