Package: templateICAr
Type: Package
Title: Estimate Brain Networks and Connectivity with ICA and Empirical
        Priors
Version: 0.11.3
Authors@R: c(
    person(given = "Amanda",
           family = "Mejia",
           email = "mandy.mejia@gmail.com",
           role = c("aut", "cre")),
    person(given = "Damon",
           family = "Pham",
           email = "damondpham@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-7563-4727")),
    person(given = "Daniel",
           family = "Spencer",
           email = "danieladamspencer@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0002-9705-3605")),
    person(given = "Mary Beth",
           family = "Nebel",
           email = "Nebel@kennedykrieger.org",
           role = c("ctb"))
    )
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Description: Implements the template ICA (independent components analysis) model
    proposed in Mejia et al. (2020) <doi:10.1080/01621459.2019.1679638> and the 
    spatial template ICA model proposed in Mejia et al. (2022)
    <doi:10.1080/10618600.2022.2104289>. Both models estimate subject-level 
    brain as deviations from known population-level networks, which are 
    estimated using standard ICA algorithms. Both models employ an 
    expectation-maximization algorithm for estimation of the latent brain 
    networks and unknown model parameters. Includes direct support for 'CIFTI',
    'GIFTI', and 'NIFTI' neuroimaging file formats. Note, this package has been 
    deprecated and superseded by 'BayesBrainMap', which includes model 
    improvements and new names for the core functions.
Depends: R (>= 3.6.0)
License: GPL-3
Additional_repositories: https://inla.r-inla-download.org/R/testing
Encoding: UTF-8
Imports: abind, fMRItools (>= 0.5.3), fMRIscrub (>= 0.14.5), foreach,
        ica, Matrix, matrixStats, methods, pesel, SQUAREM, stats, utils
Suggests: ciftiTools (>= 0.13.2), excursions, RNifti, oro.nifti, gifti,
        covr, parallel, doParallel, knitr, rmarkdown, INLA, testthat
        (>= 3.0.0)
URL: https://cran.r-project.org/package=BayesBrainMap
BugReports: https://github.com/mandymejia/templateICAr/issues
Config/roxygen2/version: 8.1.0
NeedsCompilation: no
Packaged: 2026-09-16 05:28:42 UTC; ddpham
Author: Amanda Mejia [aut, cre],
  Damon Pham [aut] (ORCID: <https://orcid.org/0000-0001-7563-4727>),
  Daniel Spencer [ctb] (ORCID: <https://orcid.org/0000-0002-9705-3605>),
  Mary Beth Nebel [ctb]
Repository: CRAN
Date/Publication: 2026-09-16 14:10:01 UTC
