f08bc533c501afef2e1421288e4de760 *DESCRIPTION
f136ab506ad463a56d9e2f0ef6afd36c *NAMESPACE
931e9c83013bce07b10c5342ca1245e4 *NEWS.md
4f2501b17d0f176225853d1ec141255f *R/RcppExports.R
16f67d9687ebf89433a545185f37e8c1 *R/classify_sequences.R
59a9710ca0e4621c20a8e404c76cc97c *R/create_database.R
36d2228a5fdd698fe6f8f69df5e6ee07 *R/data.R
7f95dc30fd19bd416cf9f66451cf8ba6 *R/example.R
08b4ce1472ca205ff4efae2eb440720d *R/filter_taxonomy.R
b52a3053fd694eef90589aa0200d39d8 *R/kmers.R
ffb18ce155be35859a4608d3a6bf6515 *R/phylotypr-package.R
3f6093d3622f33743a452b0fc9198232 *R/print_taxonomy.R
373aae656cdc746252f2cb878edfd44a *R/read_fasta.R
e5ed93232d31c47ace0203b1150ae52e *R/read_taxonomy.R
66590056004e87b6b2f2c4f64982469c *R/write_fasta.R
6d8a8ccfc286344e6bf21384e0a1cb36 *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
0887dad6096a3eb8d5537716155e945e *build/vignette.rds
3c840fe4e02c2bf4464783f8ebfe6a5c *data/rdp_trainset9.rda
b5547b4f83ca7a0837ca92b8a8df22e0 *data/rdp_trainset9_pds.rda
87dddd4375d4aa18d6cd7f6de8568957 *inst/CITATION
ce53a4742b5cf26008383ba7befc0774 *inst/WORDLIST
21d6920b2c9660b4513c8987b466f365 *inst/doc/phylotypr.R
60993837f654ab9e7e4220fb99817865 *inst/doc/phylotypr.Rmd
bf02885e2fdec91caacc808add279901 *inst/doc/phylotypr.html
60970b750673e81f320380aced1711e8 *inst/extdata/miseq_sop.fasta.gz
8d583d32a221bd6e8d7af30735a2b598 *man/build_kmer_database.Rd
54ccc8022148995fab41db23cfe3e738 *man/classify_sequence.Rd
0e2688323f5f4e21d35f5e1afdb02054 *man/classify_sequences.Rd
60ca34383180ade78d6f3c8edbca08e7 *man/create_database.Rd
32cb276b6dcaf4f2afe9e06868a42cfa *man/figures/README-pressure-1.png
91596668b4f9bc966404bfada0886d57 *man/figures/logo.png
f1944dc65889f7639dc429d8ad73874f *man/filter_taxonomy.Rd
009637313d03d2ae29b9e9fae268ea9b *man/phylotypr_example.Rd
827eea37a1b1d275c86160d9256464e5 *man/print_taxonomy.Rd
545dead012c5134eae73526d803c264d *man/rdp_trainset9.Rd
ed5a04c44769f23f4113a0bc3378e9e1 *man/read_fasta.Rd
e09df7d42882c24fd58e7ca1f09735d5 *man/read_taxonomy.Rd
f8491ae2fb5ef1bd42ccb657690b3594 *man/write_fasta.Rd
73f2b6d55d406900e84cb0cdfbc7adc3 *src/RcppExports.cpp
e8a209e36797c674e1ee69812c26f04a *src/classify_bs.cpp
35c7a783b9a9fd04b08462324c1db006 *src/classify_bs.h
4b8a426ba8d3e7199e365a1a3ee2b403 *src/detect_kmers.cpp
520a82e79c757673ed5d184c2b3731ef *src/detect_kmers.h
fd727bc1cd57f81177dd92e67ed495c2 *src/do_classify.cpp
c6c1e60d0eb7167633f7382b6ab99e96 *src/do_classify.h
68c4f7d4643865c0ce09c980b78153ef *src/kmers.cpp
78a99065a87419921c50e306b20b45ce *src/rng.cpp
159da5b280e4818f05fba575fd3da69b *src/rng.h
a2bca279c82394260d6049c0dbbd1601 *src/utils.cpp
e22ff82ed2e5381070996e142cedd346 *src/utils.h
50af50ee780ce008342faee60179f247 *tests/testthat.R
979e3328fde50d63a45f3aaea208ff19 *tests/testthat/test-classify_sequences.R
4fda7f2a41c05636ccffbc2d77c4b52a *tests/testthat/test-create_database.R
81f624273193dc9a570c26a0830fb241 *tests/testthat/test-example.R
18127ef6e0ba939599f2708c31932bf0 *tests/testthat/test-filter_taxonomy.R
3a543916a98b6947b044154336b551d8 *tests/testthat/test-kmers.R
bbc0782c17eb19af24aedd3960a140a1 *tests/testthat/test-print_taxonomy.R
5556cf3b60c5189de9c5f08041be4b1e *tests/testthat/test-read_fasta.R
e19288eeb941b0f6f51c5af8f229cf22 *tests/testthat/test-read_taxonomy.R
170ad879385d5267717c5f4a502fa058 *tests/testthat/test-write_fasta.R
60993837f654ab9e7e4220fb99817865 *vignettes/phylotypr.Rmd
