Package: omicsTools
Title: Omics Data Processing Toolbox
Version: 2.0.0
Authors@R: c(
    person("Yaoxiang", "Li", role = "aut"),
    person("Meth", "Jayatilake", role = "aut"),
    person("Anushka", "Dongaonkar", role = "aut"),
    person("Rupayan", "Mallick", role = "aut"),
    person("Amrita", "Cheema", email = "metabolomics@georgetown.edu",
           role = c("cre", "aut"))
  )
Description: Provides tools for processing and analyzing omics data from
    genomics, transcriptomics, proteomics, and metabolomics platforms. Includes
    data import, filtering, imputation, normalization, targeted
    calibration, spectrum export, visualization,
    statistical comparisons, and reproducible QC reports. The QC-RLSC
    (quality control-based robust LOESS signal correction) algorithm is used
    for normalization. Dunn et al. (2011) <doi:10.1038/nprot.2011.335>.
License: AGPL (>= 3)
URL: https://github.com/cheemalab/omicsTools
BugReports: https://github.com/cheemalab/omicsTools/issues
Depends: R (>= 4.1.0)
Imports: bs4Dash, cli, dplyr, DT, ggplot2, htmltools, jsonlite, readr,
        rlang, stats, shiny (>= 1.7.2), tibble, tidyr, utils, tools
Encoding: UTF-8
Suggests: testthat (>= 3.2.0), knitr, rmarkdown, cmmr, readxl,
        openxlsx, zip
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-11-04 17:29:53 UTC; Li
Author: Yaoxiang Li [aut],
  Meth Jayatilake [aut],
  Anushka Dongaonkar [aut],
  Rupayan Mallick [aut],
  Amrita Cheema [cre, aut]
Maintainer: Amrita Cheema <metabolomics@georgetown.edu>
Repository: CRAN
Date/Publication: 2026-11-04 23:10:02 UTC
