eaf8c44fe03efb783f57a2beb9e037d2 *DESCRIPTION
b6cc07176e2898a5eee37b0c4365e93f *NAMESPACE
0329ad7d80ec875e27e24a12d359de07 *R/are_mhcnuggets_names.R
40016676b487428a9c6b87563207aec6 *R/check_ba_models.R
82761c3a5030f51e89a7df070f734dab *R/check_file_exists.R
06e8f7476a2e0d025876ba2fe3cfbe11 *R/check_mhc.R
168faedb391a0093ccec8627998f144d *R/check_mhc_class.R
aa663800c32fa37c4d29dbc6ad545483 *R/check_mhcnuggets_installation.R
2676d08c7ff1b5a40d5447811fccbb50 *R/check_mhcnuggets_options.R
f14aba90e12a6ccd6279c7ef513c8e4d *R/check_mhcnuggets_url.R
a94eda4b6c28aeeff9e7d76e731c7d95 *R/check_mhcnuggetsr_folder.R
9d27e6126317a5d3957abddfd026bdff *R/check_verbose.R
9a79d8b8234ece78e256eb595ddb8902 *R/create_mhcnuggets_options.R
49021abd392db1a278b98bd80ad306fd *R/create_temp_peptides_path.R
04fadfc97cc7f06aa23ab88b8066ac96 *R/create_test_mhcnuggets_options.R
787d2b15b7db331b9d922319f8db65d3 *R/default_params_doc.R
ce328953f6a53496cf07d9752ade1ef6 *R/downgrade_pip.R
da5ec5efb14f41b3a45258dbf80b5efc *R/get_default_mhcnuggets_folder.R
b415cd9672a9fd57457307b44f7602ff *R/get_default_mhcnuggetsr_folder.R
67fd527b08e5ca38f161ba89e2b1b1dc *R/get_default_orm_folder_name.R
d1ba11924737cfe1c21eeb4ce4b867e3 *R/get_default_ormr_folder_name.R
2b7e61bd13a86dda6e8bcacb2c05bb64 *R/get_default_python_version.R
1ec4a509430062d952ecbc8a14b54845 *R/get_example_filename.R
eda912bc9c61640a706db7dae35ed9c4 *R/get_example_filenames.R
d41d8cd98f00b204e9800998ecf8427e *R/get_installed_python_packages.R
1f7924aa62cb27798f95c0d1adfaeab5 *R/get_mhc_1_haplotypes.R
4b085ae275df37ad9d56104c29d555a3 *R/get_mhc_2_haplotypes.R
16099e4948b5b1a1eff6550171d344e5 *R/get_mhcnuggets_url.R
968e54c9acf4657f70c50a6f291c3555 *R/get_mhcnuggets_version.R
d41d8cd98f00b204e9800998ecf8427e *R/get_pip_version.R
e5242fd5a99d48f0c57a63292916cb85 *R/get_python_package_versions.R
58ad1d830f43336d24465e079f767247 *R/get_trained_mhc_1_haplotypes.R
c38a193c21ea1648f4e1062b82ea8161 *R/get_trained_mhc_2_haplotypes.R
bae84f4ec7374ba88097373b75115a62 *R/install_mhcnuggets.R
5e3ec8e9a8f4cd46a3155df57e5f329b *R/install_pip.R
3c5c353949255b90349656dc16d56885 *R/is_mhcnuggets_installed.R
71a05e79cc1708a15ed8fbc4b8801859 *R/is_mhcnuggets_name.R
f65d110c12605604d99962256644a67c *R/is_mhcnuggets_options.R
f68a353985b15ae139dfc4f011e56210 *R/is_on_ci.R
7d432cf6a9157a5b1293a5ed3cdd151e *R/is_pip_installed.R
d41d8cd98f00b204e9800998ecf8427e *R/is_python_package_installed.R
699659658c723583a0667ee78027846d *R/mhcnuggets_options_to_text.R
b8cf0f93135ab371ef779d17b1520af9 *R/mhcnuggetsr-package.R
1bf5dd96b56ed4fdb00fd053391b0b05 *R/mhcnuggetsr_report.R
4a8415a01ee6459a0a6d595903cba644 *R/mhcnuggetsr_self_test.R
40f0df17c7a0278f126472c91444b259 *R/predict_ic50.R
0e35a0d2fd691bee766e2067d005c192 *R/predict_ic50_from_file.R
648fecd9966d9b220fdbf03e534d33f4 *R/predict_ic50s.R
01e4ab09dd3f82ddcdf0a02110532715 *R/set_is_mhcnuggets_installed.R
decde4f3ebdebc93ad101d7d67bf7718 *R/set_pip_version.R
c93689cf1125754755e786b82bcc0e96 *R/to_mhcnuggets_name.R
afd67626a22c9fc297f53c6cf07fb2de *R/to_mhcnuggets_names.R
1728c8dbdc58a48eb8873fcce39848c5 *R/uninstall_mhcnuggets.R
c5699c69be126e1636db7b79d4857064 *R/uninstall_pip.R
1dd29ba13abab672ac74de88e7aa5ff7 *R/upgrade_pip.R
eefbafbc2b1f78d5efcbb67c8add2769 *build/vignette.rds
377c336a758c6c5f84e7500a4b08313a *inst/WORDLIST
986a0c86f50ffe3e94ab8f2dd2414543 *inst/doc/demo.R
5c5283a9b6bfb4e2da6915263a09a0c9 *inst/doc/demo.Rmd
7304b18cae71b93e9e6b120a39dd3dc0 *inst/doc/demo.html
602279321875d0b2872b225432bccd6b *man/are_mhcnuggets_names.Rd
7c0bec6ddd2ca6ecfc6b3259adec5b7a *man/check_ba_models.Rd
f1776a33aea82630e7f461414153d9ba *man/check_file_exists.Rd
b57b2481661a67d32fec1fff6627d5d8 *man/check_mhc.Rd
4afb613f426d853d1ec0a4188bf99c14 *man/check_mhc_class.Rd
2946924b2c37263667b7b60d900c43d0 *man/check_mhcnuggets_installation.Rd
86d0fa9e7303f2149e40e3213b3d60cb *man/check_mhcnuggets_options.Rd
9ab96214c465e578084db188e0af59f5 *man/check_mhcnuggets_options_names.Rd
ba257bdc99885e4c0dd3833b6dcb0360 *man/check_mhcnuggets_url.Rd
f56783464b68a59b23e9bbb9023525f3 *man/check_mhcnuggetsr_folder.Rd
f62aa3f41dadf598f0d499faaaa1fb2e *man/check_verbose.Rd
ae6e909a761b4e39c7185b4583379cb0 *man/create_mhcnuggets_options.Rd
b9ea41286f9f841d83d6ab33c3255f8e *man/create_temp_peptides_path.Rd
d7c374e7ef714d1922de5e263ef18c5f *man/create_test_mhcnuggets_options.Rd
96e24a1c937270e7050b3e333facb4ee *man/default_params_doc.Rd
ece8f798a0281fdd76f015f488e6e79f *man/downgrade_pip.Rd
f7de71e5ff24145a37bf281e4d155cfa *man/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
b55c56f3943a394162527954ca4a3009 *man/figures/GitHubActions.png
d723e294e8efa5f9af291fe9c3f39185 *man/get_default_mhcnuggets_folder.Rd
55f7b305a3ef940342fb638c00cdcaa2 *man/get_default_mhcnuggetsr_folder.Rd
6de3eab2734f21b427b71f1e078aed29 *man/get_default_orm_folder_name.Rd
f996f4d8878c567eec09f015510f382a *man/get_default_ormr_folder_name.Rd
9c067998ff3121e43c4ee0353e0cc34f *man/get_default_python_version.Rd
9808fffb82ae84ac13cc08bc73dc510d *man/get_example_filename.Rd
7d2aacca5d758063659a28169261a8e1 *man/get_example_filenames.Rd
aa7d35daf7a15da48327cff254ba6d6a *man/get_mhc_1_haplotypes.Rd
67bdaf0151d2b4daae8c8396832f7a7e *man/get_mhc_2_haplotypes.Rd
ccc15615c72c093aaee6bc72381bf21f *man/get_mhcnuggets_url.Rd
97be810ed5df97f2a2e3b4e54befe9d1 *man/get_mhcnuggets_version.Rd
319d67e60b9f2dbb42c92d5323740760 *man/get_python_package_versions.Rd
91be81f3531b4b8efb6722337030682b *man/get_trained_mhc_1_haplotypes.Rd
379ba1084be14ba1a3ee7a5cfb7756e5 *man/get_trained_mhc_2_haplotypes.Rd
36d69f0b396d5737ffda11da463c8e0b *man/install_mhcnuggets.Rd
f0c0f04ec3afc86a9417f17f366ca56c *man/install_pip.Rd
df4c4d0629c057e749a5784334c29fd8 *man/is_mhcnuggets_installed.Rd
cb7e6dc392c184520b25e5092638f4aa *man/is_mhcnuggets_name.Rd
8366a59f0a96ebbd26a5590336941416 *man/is_mhcnuggets_options.Rd
7afe86f79026e6b23ddba77d8efb00c3 *man/is_on_appveyor.Rd
eea7bbab5940f86bab0d2d8071fde55f *man/is_on_ci.Rd
0da48814308342d9bb7f77a45ba145ea *man/is_on_travis.Rd
1370fec6b6893939897b9675250cb750 *man/is_pip_installed.Rd
b46dd44da3ee548b4531959d64dacdad *man/mhcnuggets_options_to_text.Rd
83e920d2f35172fdf4093dcad3eedb79 *man/mhcnuggetsr-package.Rd
a0adc8711df88d0b889b61345e635ab9 *man/mhcnuggetsr_report.Rd
6407602da1d07a4834fc3a035b3b67da *man/mhcnuggetsr_self_test.Rd
f2be68eb5d256975daa183d72748e16c *man/predict_ic50.Rd
11737193441fa394436cc9eb10157b16 *man/predict_ic50_from_file.Rd
2ad3d043e620a46506cc7206009b2c30 *man/predict_ic50s.Rd
4791b27c222da7a91b53e2cc57617945 *man/set_is_mhcnuggets_installed.Rd
6ac03bbf786c3e3f522d11447e1db1c2 *man/set_pip_version.Rd
2faa89f59b98d3bd5974c195eaca0f8e *man/to_mhcnuggets_name.Rd
d052c4c1d757bcdb3fb3438f585e837e *man/to_mhcnuggets_names.Rd
340c0e7bab13b99da36d7911b027bad4 *man/uninstall_mhcnuggets.Rd
221ef44f50bc6f8d3a44ab9d8f11c0df *man/uninstall_pip.Rd
9615c26a63e634ed5ebc4904f856ceaa *man/upgrade_pip.Rd
5c5283a9b6bfb4e2da6915263a09a0c9 *vignettes/demo.Rmd
