390cbdac98fba3bdeac1684a1b77d9b8 *DESCRIPTION
0f5649d6ecfc09873d4a206116e595a9 *LICENSE
9c499e8a1f77b3aa51d394c50635ecc9 *NAMESPACE
57917d0e9b5082003fb8ba737aec727d *R/GC.R
cedd78664f388bbfa675af93ecb2b86f *R/TmCalculator-package.R
67d044d2096d79e1e4419884cbb2f3f9 *R/chem_correct.R
f0d4f8e47dc2afe7a1ad8db86e3190da *R/compare_groups.R
6721de0ce4055ce5911e095165a8f9d2 *R/coor_to_genomic_ranges.R
721936933d61a7574cf6bdd74ec8ee07 *R/ecoli_rep_hotspots.R
caee9e1642c0dc721a32a25e1411c059 *R/generate_complement.R
14fb993c35f91dfe2feab281776ddb58 *R/integrate_granges.R
4e2f1fbf825effb857d2a4b234334c00 *R/make_genomiccoord.R
150aebaad9eacfdd44e0f3ad8c739a50 *R/plot_genome_track.R
e5ebeca8e7b3deb5fe9ec3cdb76ed960 *R/plot_tm.R
7a8ed34afc95bfe608446acd664a80d8 *R/print.TmCalculator.R
bc414a6d86661b157a239d4e9e1e8796 *R/salt_correction.R
e22bfbe31575c62711ca91fcf27c8e61 *R/sysdata.rda
953f3a235f76fdc161d1779aca5e2124 *R/thermodynamic_gc_params.R
05c0a03c22522a1d227c2baf29ce422c *R/thermodynamic_nn_params.R
183355a7c5d7942352d330e782dff284 *R/tm_calculate.R
aaa5de990de5ef00e861fd4758a30c94 *R/tm_gc.R
254f28bf0708a0b14ed8e0565bb6adf4 *R/tm_nn.R
6cf6ce6da72d92f8bcb1aebe0610d929 *R/tm_wallace.R
be7e0e0ce5889c50430f1538cdbe8ddb *R/to_genomic_ranges.R
b10af1418e972caf2b29ff46b461e800 *R/utils.R
46b8ac0ce5506b6c4fa2b93b93e673ef *R/zzz.R
f51fcdcef0059a3b99688ab7655d8c8e *README.md
9151e0b0b7ae579cbbc6184920334217 *build/vignette.rds
a7994afe0dedeed6ca2de96b3afa4ab6 *data/ecoli_rep_hotspots.rda
319d0da2a5c599bf508dd5e7deca37ba *data/thermodynamic_gc_params.RData
8957e84a4ae4a445e6fcab421f3c5908 *data/thermodynamic_nn_params.RData
2ad7eb1731e15a7e0fbd20e4f56ac1c0 *inst/doc/genome_wide_tm_ecoli.R
a0188bfcc38dcbc60e51cb0bc633ae29 *inst/doc/genome_wide_tm_ecoli.Rmd
cc3f954907153443244c6d5d0ac5c914 *inst/doc/genome_wide_tm_ecoli.html
42560f1afe1ac2a85981b74b58ad3ecd *inst/extdata/BSgenome.Hsapiens.UCSC.hg38.fasta
fd78b904a716731eae8f2447e503abe6 *inst/extdata/example1.fasta
c5eb560a352d26a6af1ad9d76b3b7a35 *inst/extdata/example2.fasta
4d9d78ea0582e4402b0f179cddf78c99 *inst/scripts/app.R
c826c753659dd6003773aa6e72d6bfb9 *inst/scripts/fix_ecoli_rep_hotspots.R
b3d130de3b04fe910823960d73e7aa3d *inst/scripts/make_tm_ASM584v2.R
e933591de2aae4829cf5099de0e04153 *inst/vignette-source/genome_wide_tm_ecoli.Rmd
a0dab6f6bc78dc15ec12aa16648bb61a *man/TmCalculator-package.Rd
93cece9cff2f35fba72251ecdf160715 *man/c2s.Rd
00d674dedfadc7d517c7037e954c9815 *man/check_filter_seq.Rd
b1b7650f37e6e789dc581813a5632fe4 *man/chem_correct.Rd
a34714da698b930a416530af35e2d2e2 *man/compare_groups.Rd
cccd946b4dc195e87b97bd3ed7cc9e80 *man/complement_fast.Rd
b14b8874773916027c05e9e40f012560 *man/coor_to_genomic_ranges.Rd
1305e364e46ef845ce39930cb4478655 *man/dot-filter_N_windows.Rd
cc7521a40b2acf11925085374e79718e *man/dot-find_N_bounds.Rd
c904360bbbba36506f78c46b4d4a0998 *man/dot-get_bsgenome_from_pkg.Rd
bd32cd3ffe57101b3d9ec155ac792330 *man/dot-getseq_preload_chr.Rd
4994f469e5e34c5f73654ae5badca736 *man/dot-getseq_vectorized.Rd
91c7df0527f718b395b9b842d7cce084 *man/dot-load_genome_packages.Rd
a14fc7c7c00af85eed9b05651557b5e9 *man/dot-normalize_tm_gc_metadata.Rd
72ff0bce3b1a28ee427343a63660eee8 *man/dot-parse_coord_strings.Rd
0fe9f06d9f02e5c1c2e5b0f1240d8623 *man/ecoli_rep_hotspots.Rd
c0914d78fd2e12697a0aa982fc309116 *man/fa_to_genomic_ranges.Rd
49d51fbaf61f38155313b23ea41cb677 *man/figures/logo.png
f6a8098f9783fe134a4fbc2deb33f646 *man/gc.Rd
b9a8339e5d9e7955b130cd8ef16c0af7 *man/generate_complement.Rd
c93cddcb8b47bb439be451abcd2cca52 *man/integrate_granges.Rd
83a6f281e2c0b99bd05c48ddd1ef121d *man/make_genomiccoord.Rd
236141e9e6b2373240a837639d35593e *man/plot_genome_track.Rd
275b177efcf217fa2442d7403423ae49 *man/plot_tm.Rd
3ec4c5002a07ab6681c03389caee2be2 *man/print.TmCalculator.Rd
fe5632a1a97ae8d4da8f20433f473542 *man/s2c.Rd
b5375f54147d2f86535fae2e7b72e9a2 *man/salt_correction.Rd
92c99cc50f0c96709836f65ef33fb177 *man/thermodynamic_gc_params.Rd
0e18d79d9e01e636f741ca5e28136191 *man/thermodynamic_nn_params.Rd
f778dbf77925c6308d64b6f33f1d64ff *man/tm_calculate.Rd
ef5dc12c2d6e53c8dec746eb5980acfa *man/tm_gc.Rd
c02be6df4f5be0f40b54aa467d2723ca *man/tm_nn.Rd
15b48216c397f27ee30cf4787c4a92b0 *man/tm_wallace.Rd
b8eb3368ec81e55f4437f51e8f8012a2 *man/to_genomic_ranges.Rd
9066e050e761f5c80447860fca9e5a58 *man/vec_to_genomic_ranges.Rd
d375370dd5390d8b8bfa9d87eaf0723a *tests/testthat.R
ba5c4593857db764391629ac230608ba *tests/testthat/test_tm_calculate.R
a0188bfcc38dcbc60e51cb0bc633ae29 *vignettes/genome_wide_tm_ecoli.Rmd
