citHeader("To cite Rclade in publications, use:")

bibentry(
  bibtype  = "Manual",
  title    = "Rclade: Automated Deep-Time Phylogenetic Tree Collapsing and Visualization",
  author   = person("Zichao", "Zeng", email = "zengzichao@sjtu.edu.cn",
                     role = c("aut", "cre")),
  year     = "2026",
  note     = "R package version 1.1.2",
  textVersion = "Zeng Z (2026). Rclade: Automated Deep-Time Phylogenetic Tree Collapsing and Visualization. R package version 1.1.2."
)

citHeader("Rclade builds on the ggtree and deeptime ecosystems. If you use Rclade",
          "in published research, please also cite these key dependencies:")

bibentry(
  bibtype  = "Article",
  title    = "ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data",
  author   = c(
    person("Guangchuang", "Yu"),
    person("David", "Smith"),
    person("Huachen", "Zhu"),
    person("Yi", "Guan"),
    person("Tommy Tsan-Yuk", "Lam")
  ),
  year     = "2017",
  journal  = "Methods in Ecology and Evolution",
  volume   = "8",
  number   = "1",
  pages    = "28-36",
  doi      = "10.1111/2041-210X.12628",
  textVersion = "Yu G, Smith DK, Zhu H, Guan Y, Lam TT-Y (2017). ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution, 8(1), 28-36. doi:10.1111/2041-210X.12628"
)

bibentry(
  bibtype  = "Article",
  title    = "deeptime: an R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals",
  author   = as.person("William Gearty"),
  journal  = "Big Earth Data",
  year     = "2025",
  doi      = "10.1080/20964471.2025.2537516",
  textVersion = "Gearty W (2025). deeptime: an R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals. Big Earth Data. doi:10.1080/20964471.2025.2537516"
)
