Package: BreedReliabR
Type: Package
Title: Decision Reliability for Genotype Advancement under Prediction
        and Target Environment Uncertainty
Version: 0.1.1
Authors@R: c(
    person("Ashutosh", "Sawarkar", role = c("aut", "cre"),
        email = "annu.sawarkar@gmail.com",
        comment = c(ORCID = "0000-0002-1016-8822")),
    person("Santosh", "Patil", role = "aut",
        email = "patil.sgstat@icar.org.in",
        comment = c(ORCID = "0000-0002-5370-3522"))
    )
Description: A model-agnostic research layer for genotype advancement decisions
    from externally fitted genomic prediction models. It propagates full joint
    coefficient prediction-error covariance together with finite sampling from
    a specified target population of environments to calculate conditional
    advancement probabilities, expected selected-set reliability, and the
    relative contributions of prediction and target-environment uncertainty.
    It also compares uncertainty formulations and reports geometric support
    diagnostics. Probabilities are conditional on supplied inputs and are not
    guaranteed to be calibrated in new populations or environments.
URL: https://github.com/annusawarkar-sys/BreedReliabR
BugReports: https://github.com/annusawarkar-sys/BreedReliabR/issues
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.6.0)
Imports: stats, graphics
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
VignetteBuilder: knitr
LazyData: true
Config/testthat/edition: 3
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2026-10-01 16:47:52 UTC; User
Author: Ashutosh Sawarkar [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1016-8822>),
  Santosh Patil [aut] (ORCID: <https://orcid.org/0000-0002-5370-3522>)
Maintainer: Ashutosh Sawarkar <annu.sawarkar@gmail.com>
Repository: CRAN
Date/Publication: 2026-10-16 15:10:18 UTC
