7533b97bdbefe1ce77d47b987c81774c *DESCRIPTION
21ad86a75ffc446b6cc55695c64b2874 *NAMESPACE
a9ccd03b3552e55b435b526925cb8024 *NEWS
9ec82f2d0258ee1375060d7b0b327b4f *NEWS.md
97163de46be336c05c8c21a53c1324a9 *R/auto.axis.R
0a1af8b070e1361db1f040331a3c41cc *R/colour.gradient.R
41029b4eae83b2e6106ba2e07489a0bd *R/covariates.grob.R
5c3f448a75787701a70e6807375ed07c *R/create.barplot.R
02df914690edd86e98d64ee3904b28e8 *R/create.boxplot.R
3e3c8213f3e193c31e5be93bdad7c709 *R/create.colourkey.R
8db8b6eb491c2685760016ccf1b32cb1 *R/create.dendrogram.R
0aa46f9162177066659f930b9b1983a2 *R/create.densityplot.R
2e324211ee5e3809da3d5151f8898f8f *R/create.dotmap.R
ca5580ecbb07e855f41d17302601f3b1 *R/create.gif.R
950814dbd29a475fa1c1b81f440ad58d *R/create.heatmap.R
8b9370184cc1b6a3aabb7a72983d648d *R/create.hexbinplot.R
df40f29822cb71fa4a11b74b93aeeb5d *R/create.histogram.R
18d64fba6c0eaa78a5a1a9a8ec835c91 *R/create.manhattanplot.R
aae7e7bcaf13aa9c30eb463c2cfd8c12 *R/create.multipanelplot.R
3b2946fe9e12a7ff4580a0c4c24fb261 *R/create.multiplot.R
8837a7fdfd5ca47953c11d364d68aa37 *R/create.polygonplot.R
669f5a9b6bfdb54b0dc76acd03fdccf5 *R/create.qqplot.comparison.R
71ee51ac0d5f611360f6eb81637754f4 *R/create.qqplot.fit.R
7b696e18c1a75b311bddf02930d74fc2 *R/create.qqplot.fit.confidence.interval.R
28efb7bf61d38aed82cacac39e28e89a *R/create.scatterplot.R
9d52c3a927fdb75ab1c5ac9a76c76f50 *R/create.segplot.R
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62b43d7318b94770c5738189f8385e57 *R/create.violinplot.R
a8f1a17cfd5c487e3641d096b5dc0af1 *R/critical.value.ks.test.R
067fc26e33b8d7aa9d8487d2cc2c8af2 *R/default.colours.R
84b32f3e7da140463e1ca84d8bb993d9 *R/display.colours.R
3812e0ef5d95fe832c009a960a1bded4 *R/display.statistical.result.R
b2bba00b638d34e0476437d1d7ff9f72 *R/dist.R
68e197f4d3aa36ae0db33227e0234e41 *R/export.to.file.R
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648984a32445e2db835c880d7fcfeaae *R/generate.at.final.R
a4f7ef94c3de935fcb5fd1c66d05dd27 *R/get.corr.key.R
e5c0435ebbcbf0aec631c9d73348e20e *R/get.correlation.p.and.corr.R
4bfefcedd30db76ad09d81bfe8d0fe65 *R/get.defaults.R
bc309228abd08136b35d45d859ee4e42 *R/get.line.breaks.R
1465a25a9e5b55524a593d6d52a9e365 *R/inside.auto.legend.R
e3ab0b1c831cb1b8e468d70ff3c9775d *R/legend.grob.R
7404d3142414880dd956ee5d115ad7c4 *R/parse.formula.R
c80ded6f64f5fbbde25eb99f8aa48206 *R/pcawg.colours.R
6f8113433c075c6b70a9072529839e2c *R/prep.inputs.R
9d5be649999ff277008936545f6575e2 *R/scientific.notation.R
8f1f6635d772cbfda0c1f53780f98547 *R/show.available.palettes.R
2d84d873700841ea530633f989045cd8 *R/thousands.split.R
f17e700dde3dee2d50476252582fed08 *R/write.metadata.R
836b12ae4be8c2887b9a7d470b475459 *R/write.plot.R
d68929eba584a03edb8b5fde81e317ad *README.md
c557ef69b427d0611c89372bfb9d35df *TODO
edb9be5696c9d660667f6b65c5241bca *build/vignette.rds
43121178ba7bd1a17d4c74cd7b582f5e *data/CNA.rda
0bc523c105bea5050e6ab5368697ed09 *data/SNV.rda
b6763f0a9eb9119521793935bbaad66f *data/microarray.rda
1a1d8eda8ea30582c9c739dd971f3fd0 *data/patient.rda
76c9911427b30523d330e1fa433bce09 *inst/doc/PlottingGuide.Rnw
a8a5df880081eb61b04b6c7e3d3886ba *inst/doc/PlottingGuide.pdf
fa5d8d13ddbb96e6fc27eed76aaebd63 *inst/ext2function.txt
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34a44012c2b430a0ac105950c00df1f3 *inst/scripts/test_greyscale.R
9e217d1c399954757722245cb70713e4 *man/CNA.Rd
0a140ad2ab4032fa28e74a1373b69857 *man/SNV.Rd
90937eb710d048a9737a820ae876e601 *man/auto.axis.Rd
21c4abc319e7d94705f7bad161d1b433 *man/colour.gradient.Rd
41be320d39a930634ecc5a125f9b6301 *man/covariates.grob.Rd
744a81e8060a9abe5859124cc6228c0a *man/create.barplot.Rd
37c21bc97d1f0ff6ee8ad6188a015df4 *man/create.boxplot.Rd
e5d4fd87e653e04c6f8ba83242c51712 *man/create.colourkey.Rd
add552dadd61324a9dae32930457c93e *man/create.dendrogram.Rd
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2479e52c167ee5a8985cdfc30a887193 *man/create.dotmap.Rd
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7e34966512c5fddd93a2da70723790a6 *man/create.lollipopplot.Rd
af8f9f85fe9c08fdf0a828470c39f976 *man/create.manhattanplot.Rd
d99198f5eecb3e9e9bc98c14fd6a7d30 *man/create.multipanelplot.Rd
9945d55345189de5f2316746ad470602 *man/create.multiplot.Rd
4411f8300ebc4110d87757116c6e6b3d *man/create.polygonplot.Rd
5159b6d34dbc393b6a8d055233b3bf81 *man/create.qqplot.comparison.Rd
92735a565e2b882dc339d2e02d3a65af *man/create.qqplot.fit.Rd
47693a58d2d829333097b219ef056dab *man/create.qqplot.fit.confidence.interval.Rd
a435370bb5d1b1c411a105c76adc1c73 *man/create.scatterplot.Rd
4cda51d1530b5ae80473c80b84164f83 *man/create.segplot.Rd
082ab4400476a2e827e6619df07f2c3b *man/create.stripplot.Rd
6d4d602bac47ec23938e4cf2e679fabc *man/create.violinplot.Rd
f4480f7940ee90851bad067c9353ad10 *man/critical.value.ks.test.Rd
da21cc4d064fe144c199e56e8833d79c *man/default.colours.Rd
8d9bc396b69574402dadd6d79caaf2e3 *man/display.colours.Rd
1d675c3b906d9c9210f57036c41f7dfe *man/display.statistical.result.Rd
bde0cd9570915dbbafaea23c09eeb16d *man/dist.Rd
73ab8744183fba5314fd5c5e89f00e80 *man/force.colour.scheme.Rd
f8923616766a555dfe886d6318eab2cb *man/generate.at.final.Rd
aee6f01a3bf8a32ab41060a19fb23653 *man/get.corr.key.Rd
15e81c6a9200420ea53709b7c0c6bb93 *man/get.correlation.p.and.corr.Rd
a78c33d683d2e6a64949a388a00ff1ad *man/get.defaults.Rd
cfe04ce8a4f275ca395c3f07fb6eb06d *man/get.line.breaks.Rd
566c07d930c1ea4e0fe052f8c1b9a2f4 *man/legend.grob.Rd
4b3584fbe2775fa8b491f188b7f5d936 *man/microarray.Rd
95e0cfc6419a8dd298142d6a7f3a9c9a *man/panel.BL.bwplot.Rd
63202c2fbb6b6fd8c58ee7104459189d *man/patient.Rd
f4d29b8e10759ac7bd24003d735584e8 *man/pcawg.colours.Rd
7c44dd70d6e34e9118c9a2090f837cdf *man/scientific.notation.Rd
5014ac3f747881af2c3e74b156ca5dc3 *man/show.available.palettes.Rd
8b37b271c9a62bd158c73362e554e044 *man/thousands.split.Rd
969cfad5b2a7e947afa3d15be92dd439 *man/write.metadata.Rd
db0b210f619b33c939f44ef4e9d8c74c *man/write.plot.Rd
03a8ed0bc9ee2559c14b11f60d1a1b97 *src/distance.c
599ce40058fc07ac110938feeb2a6aa4 *src/init.c
7b78ed1421d9f3ed428c9c2e3cbc4a77 *src/ks.c
4a597489e6cfb96cd9d24d6d4fe71c62 *src/mva.h
74fca1a72c31c0d1b877432da30afaae *src/stats.h
a046af75d68fa7fac823d5c307a42178 *src/ts.h
babfd2fd6d0d4fcd23e6a1c67bfeb490 *tests/test_plotting_functions.R
717462020e3c1b4438221b29effbb713 *tests/testthat.R
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9db12f841e271ce5e62d2e31b892466c *tests/testthat/test-prep.inputs.R
9a6a2cd141b79aa14960eea664c95756 *vignettes/Figures/Multiplot_Ex2.png
743b7569cf51bd87799671055beb9d8d *vignettes/Figures/chart-types.png
db41b5c83b1e8b3dcb10a8e3a25a64e7 *vignettes/Figures/colour_wheel.png
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08e481e16cf4fa717ac5e8f1144c9262 *vignettes/Figures/intro_plotting_ex.png
76c9911427b30523d330e1fa433bce09 *vignettes/PlottingGuide.Rnw
