870be3a6630219d14e08664daad3586e *DESCRIPTION
0cb4fe5b830cae494d8311c13d4abaf9 *NAMESPACE
620bdf4d3aa0118fde34cee7bc8822bb *NEWS.md
ed51967b483ebd115de5dc33d7f932ac *R/RcppExports.R
89ace4222e1fcfc8b3ef07f0b5815211 *R/ashdog.R
c23e0afed026defe812cf0dcc490e3e4 *R/data.R
07fdd384fcc74c4b2472d9cfcb2c89fb *R/multidog.R
a00d7b0a1af485bd7d9d831cd11e4660 *R/oracle.R
8936176edec45ce3dd662d3275965094 *R/plot_geno.R
7416d06d02b880f7b4c4e9eae2901ac0 *R/pp.R
4791d65457b1cbe429110d2717f1f343 *R/rflexdog.R
d8bd87693c334a34e4cf036fba6caa0a *R/updog.R
e25e732923fd326ab386626fec6dd26f *README.md
439bf689fa27cf9affd0335332142165 *build/partial.rdb
94d088e21c77d45cd8dab0418c10c733 *build/vignette.rds
7255011096751b0d21c32d94dd13f82a *data/snpdat.RData
0f4eae7684ac52f9450a8505a9accbe3 *data/uitdewilligen.RData
be1ba1ef718110bc5d50402f207ebdf6 *inst/CITATION
d7ce6066ba9919d83d304e2c08ba0caa *inst/doc/multidog.R
2f24c415be87fb753b63466c7c09f1d6 *inst/doc/multidog.Rmd
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4e5c9dcc6dc2f9d1e2d4215f3c654fc9 *inst/doc/oracle_calculations.R
ca98f9393ce65af897583118e5ca70fb *inst/doc/oracle_calculations.Rmd
300cc45a9a74df41fa10e78832d97a14 *inst/doc/oracle_calculations.html
567ebcaea2a8cbb7656289d1d9cab522 *inst/doc/simulate_ngs.R
2b85860d0801255ac8b7754f5e935168 *inst/doc/simulate_ngs.Rmd
8defcafb0e6d6f021d9edf455c8224f6 *inst/doc/simulate_ngs.html
0a6c5b3b1f2413f85ce37eee3dca5bf0 *inst/doc/smells_like_updog.R
f97b57a27027996e607b60cef3300bf4 *inst/doc/smells_like_updog.Rmd
c8f999802a3368b8fc408ff6fe65dc0d *inst/doc/smells_like_updog.html
fbe7aea4f6ba51339b0b2e115a6a09e0 *inst/include/updog.h
cd59973a8fae2b64b3e30a32d45d105a *inst/include/updog_RcppExports.h
531f4aa535be095c60e8462c937cd429 *man/betabinom.Rd
cef678baacccae88576bf78db4c0ea1d *man/figures/logo.png
26465b7effb4c4a695d0e70d4937477a *man/filter_snp.Rd
8b774199748a3041ae4db63f29398d4b *man/flexdog.Rd
d7fd99bbd340342f270345cb233cf981 *man/flexdog_full.Rd
c0949fd9e88dcc83d9bbc3cb6a24a8f8 *man/format_multidog.Rd
b5ddba8234db3085556339d7dc182935 *man/get_q_array.Rd
625b17de09c2a1f21dc0e4a8adb31840 *man/is.flexdog.Rd
8ac18d3d0d1939ea9a449ead49f3dfad *man/is.multidog.Rd
641d5a2d223c1b65335443540f9efa87 *man/log_sum_exp.Rd
a8613e6b19a40a5eecf1786064785438 *man/log_sum_exp_2.Rd
94980d029e581c1f6d2793f4f4935e5f *man/multidog.Rd
4e64cf5d7cb16c39c51d9b8b7285f408 *man/oracle_cor.Rd
c9971a12a32c642b9886733a975dafe8 *man/oracle_cor_from_joint.Rd
5d7fe11969e2ba816f2c0096c9035b49 *man/oracle_joint.Rd
dd4a9caec8f60710cf549ea4c94a4867 *man/oracle_mis.Rd
7991cdaad71e11eb4f9fcbc06115a33c *man/oracle_mis_from_joint.Rd
0213305068e0c1e736b94707fd8c1e74 *man/oracle_mis_vec.Rd
1e55b4822e4edc6f106f39bb0298022f *man/oracle_mis_vec_from_joint.Rd
3699ec833d7caa391025aecd698aabb2 *man/oracle_plot.Rd
bc039b91b5b22ce84886b33897e72629 *man/plot.flexdog.Rd
1443f49569ab2bce299654206b7c44d7 *man/plot.multidog.Rd
4b7b5ed3e0ef99fff1bd77c535d9fc21 *man/plot_geno.Rd
b1a2f96332cbca1d49adc1323ee6afbe *man/rflexdog.Rd
d5047ebc47408c04092822432430eec7 *man/rgeno.Rd
b1624637f12637022b955688ab386c37 *man/snpdat.Rd
77f150830d225295298977ce01ceeb75 *man/uitdewilligen.Rd
3a8f7e9107d095ff2590b3be07127d26 *man/updog-package.Rd
8e6f5ad131ac207d16a504de622f14e2 *man/wem.Rd
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars.win
e61bc667483529cca41a623e24937809 *src/RcppExports.cpp
3a7045a1ed67099d64c51e2a6a78a6ff *src/betabinom.cpp
ecec3e7f87815d1a6c6f8381e5f4e7b0 *src/em.cpp
69cb958fb9bd6fea39a4056d769e0acd *src/flexdog.cpp
2f510e52e522bab8c42558d0e18c9073 *src/gradients.cpp
2b890edf68d9db185d110a264830eb2b *src/mupdog.h
67aa205e9ce345eb71dd12be5359dab8 *src/objective.cpp
c80d95fd046fc61c1a49d8bd87fda73a *src/oracle.cpp
190301ae35d06d54617263a9c717d409 *src/util_funs.cpp
2d47e9e17ec521ff1bd6ce268925337a *tests/testthat.R
eecf5d7f8604adab1c8ab1ef44aceae8 *tests/testthat/cvx_prob.RDS
b2ac6c40f3e45791917b2fc60f8192b5 *tests/testthat/out_err.RData
cbf9d3bd5ebb489e7bac6e19fa835c6b *tests/testthat/test_dbetabinom.R
491802d099b363458179f7ada4019f39 *tests/testthat/test_f1_genotyping.R
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4b8d662afea8fdfcf7f4863b98f1cd1b *tests/testthat/test_gradients.R
48a05aec75cc559e796881d0ace23224 *tests/testthat/test_objectives.R
e459c8e723e5c900e776c539f2353ea7 *tests/testthat/test_oracle.R
5b6e7fe2b17b225de912b98724308681 *tests/testthat/test_rflexdog.R
bc548165b75efb4b7e4bf58fb7281679 *tests/testthat/test_utils.R
5e8d870719b4f00954cb20c979517e79 *tests/testthat/test_wikmat.R
6775e60c5a1a5682119d7c6d3c5ffdea *tests/testthat/testdat.RData
2f24c415be87fb753b63466c7c09f1d6 *vignettes/multidog.Rmd
ca98f9393ce65af897583118e5ca70fb *vignettes/oracle_calculations.Rmd
2b85860d0801255ac8b7754f5e935168 *vignettes/simulate_ngs.Rmd
f97b57a27027996e607b60cef3300bf4 *vignettes/smells_like_updog.Rmd
