cluster, corrplot, cowplot, data.table, doParallel, dplyr,
flexmix, foreach, ggplot2, maftools, methods, NMF,
RColorBrewer, tidyr, magrittr, purrr
cluster, cowplot, data.table, doFuture, dplyr, flexmix,
foreach, furrr, future, GenomicRanges, ggalluvial, ggplot2 (>=
3.3.0), ggpubr, IRanges, maftools, magrittr, methods, NMF,
purrr, RColorBrewer, rlang, stats, tibble, tidyr, patchwork,
ggplotify, circlize, lsei
cli (>= 2.0.0), cowplot, data.table, dplyr, foreach, furrr,
future, ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr,
methods, NMF, purrr, Rcpp, rlang (>= 0.1.2), stats, tidyr
cli, cowplot, data.table, dplyr, foreach, furrr, future,
ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr, methods, NMF,
purrr, rlang, stats, tidyr
cli (>= 2.0.0), cowplot, data.table, dplyr, foreach, furrr,
future, ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr,
methods, NMF, purrr, rlang, stats, tidyr
cli (>= 2.0.0), cowplot, data.table, dplyr, foreach, furrr,
future, ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr,
methods, NMF, purrr, rlang (>= 0.1.2), stats, tidyr
cli (>= 2.0.0), cowplot, data.table, dplyr, foreach, furrr (>=
0.2.0), future, ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr,
methods, NMF, purrr, Rcpp, rlang (>= 0.1.2), stats, tidyr
cli (>= 2.0.0), cowplot, data.table, dplyr, furrr (>= 0.2.0),
future, ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr,
methods, NMF, purrr, Rcpp, rlang (>= 0.1.2), stats, tidyr
BSgenome, BSgenome.Hsapiens.UCSC.hg19, cowsay, ggpubr, knitr,
rmarkdown, covr, testthat, prettydoc, pheatmap
BSgenome.Hsapiens.UCSC.hg19, cowsay, ggpubr, knitr,
rmarkdown, covr, testthat, prettydoc, pheatmap
BSgenome, BSgenome.Hsapiens.UCSC.hg19, covr, fuzzyjoin,
ggfittext, knitr, pheatmap, rmarkdown, roxygen2, R.utils,
testthat
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggfittext, ggplotify, IRanges, knitr,
patchwork, pheatmap, pracma, quadprog, R.utils, RColorBrewer,
reticulate, markdown, rmarkdown, roxygen2, testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggfittext, ggplotify, IRanges, knitr,
markdown, nnls, patchwork, pheatmap, quadprog, R.utils,
RColorBrewer, reticulate, rmarkdown, roxygen2, testthat,
tibble, ggrepel
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel,
IRanges, knitr, markdown, nnls, patchwork, pheatmap, quadprog,
R.utils, RColorBrewer, reticulate, rmarkdown, roxygen2,
testthat, tibble
Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19, circlize,
covr, doFuture, flexmix, GenomicRanges, GenSA, ggalluvial,
ggfittext, ggplotify, IRanges, knitr, lsei, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, rmarkdown, roxygen2,
testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, covr, doFuture, flexmix, GenomicRanges, GenSA,
ggalluvial, ggfittext, ggplotify, IRanges, knitr, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, rmarkdown, roxygen2,
testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, covr, doFuture, flexmix, GenomicRanges, GenSA,
ggalluvial, ggfittext, ggplotify, IRanges, knitr, patchwork,
pheatmap, pracma, quadprog, R.utils, RColorBrewer, rmarkdown,
roxygen2, testthat, tibble
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, doFuture, flexmix, GenomicRanges,
GenSA, ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel,
IRanges, knitr, markdown, nnls, patchwork, pheatmap, quadprog,
R.utils, RColorBrewer, reticulate, rmarkdown, roxygen2,
testthat, tibble, scales, matrixStats
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, doFuture, flexmix,
GenomicRanges, GenSA, ggalluvial, ggcorrplot, ggfittext,
ggplotify, ggrepel, IRanges, knitr, markdown, matrixStats,
nnls, patchwork, pheatmap, quadprog, R.utils, RColorBrewer,
reticulate, rmarkdown, roxygen2, scales, synchronicity,
testthat, tibble, UCSCXenaTools
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, doFuture, flexmix,
GenomicRanges, GenSA, ggalluvial, ggcorrplot, ggfittext,
ggplotify, ggrepel, IRanges, knitr, lpSolve, markdown,
matrixStats, nnls, patchwork, pheatmap, quadprog, R.utils,
RColorBrewer, reticulate, rmarkdown, roxygen2, scales,
synchronicity, testthat, tibble, UCSCXenaTools
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, doFuture, flexmix,
GenomicRanges, GenSA, ggalluvial, ggcorrplot, ggfittext,
ggplotify, ggrepel, IRanges, knitr, lpSolve, markdown,
matrixStats, nnls, patchwork, pheatmap, quadprog, R.utils,
RColorBrewer, reticulate, rmarkdown, roxygen2, scales,
synchronicity, testthat, tibble, UCSCXenaTools, copynumber
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, GenomicRanges, GenSA,
ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel, IRanges,
knitr, lpSolve, markdown, matrixStats, nnls, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, reticulate,
rmarkdown, roxygen2, scales, synchronicity, testthat, tibble,
UCSCXenaTools, copynumber
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, GenomicRanges, GenSA,
ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel, IRanges,
knitr, lpSolve, markdown, matrixStats, nnls, patchwork,
pheatmap, quadprog, R.utils, RColorBrewer, reticulate,
rmarkdown, roxygen2, scales, synchronicity, testthat, tibble,
UCSCXenaTools, copynumber, parallel
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, copynumber, covr, digest, GenomicRanges,
GenSA, ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel,
IRanges, knitr, lpSolve, markdown, matrixStats, nnls, parallel,
patchwork, pheatmap, quadprog, R.utils, RColorBrewer,
reticulate, rmarkdown, roxygen2, scales, synchronicity,
testthat, tibble, UCSCXenaTools
Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, GenomicRanges, GenSA,
ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel, IRanges,
knitr, lpSolve, markdown, matrixStats, nnls, parallel,
patchwork, pheatmap, quadprog, R.utils, RColorBrewer,
reticulate, rmarkdown, roxygen2, scales, synchronicity,
testthat (>= 3.0.0), tibble, UCSCXenaTools