R (>= 3.4), Matrix, methods, stats, utils
Rcpp (>= 0.12.10), plyr, FNN, dplyr, grid, ggrepel, irlba,
ica, Rtsne, ggplot2, riverplot, Hmisc, foreach, parallel,
doParallel, mclust, stats, psych, RANN, uwot, rlang, utils,
hdf5r
Rcpp (>= 0.12.10), plyr, FNN, dplyr, grid, ggrepel, irlba,
ica, Rtsne, ggplot2, riverplot, foreach, parallel, doParallel,
mclust, stats, psych, RANN, uwot, rlang, utils, hdf5r
Rcpp (>= 0.12.10), plyr, FNN, dplyr, grid, ggrepel, irlba,
ica, Rtsne, ggplot2, foreach, parallel, doParallel, mclust,
psych, RANN, uwot, rlang, hdf5r, scattermore (>= 0.7),
patchwork, cowplot
circlize, cli, cowplot, ComplexHeatmap, dplyr, ggplot2, grid,
hdf5r, leidenAlg (>= 1.1.1), lifecycle, magrittr, Matrix, RANN,
RColorBrewer, Rcpp, rlang, Rtsne, S4Vectors, scales, uwot,
viridis
cli, DelayedArray, dplyr, ggplot2, grid, HDF5Array, hdf5r,
leidenAlg (>= 1.1.1), lifecycle, magrittr, Matrix, RANN, Rcpp,
RcppPlanc (>= 2.0.0), rlang, S4Vectors, scales, uwot
Seurat, knitr, reticulate, rmarkdown, testthat,
GenomicRanges, S4Vectors, IRanges, org.Hs.eg.db, reactome.db,
fgsea, AnnotationDbi
Seurat, SeuratObject, knitr, reticulate, rmarkdown, testthat,
GenomicRanges, S4Vectors, IRanges, org.Hs.eg.db, reactome.db,
fgsea, AnnotationDbi
AnnotationDbi, DESeq2, DoubletFinder (>= 2.0.4),
EnhancedVolcano, fgsea, GenomicRanges, ggrepel, gprofiler2,
IRanges, knitr, org.Hs.eg.db, plotly, psych, RcppPlanc,
reactome.db, rmarkdown, sankey, scattermore (>= 0.7), Seurat,
SeuratObject, SingleCellExperiment, SummarizedExperiment,
testthat
AnnotationDbi, circlize, ComplexHeatmap, cowplot, DESeq2,
EnhancedVolcano, fgsea, GenomicRanges, ggrepel, gprofiler2,
IRanges, knitr, org.Hs.eg.db, plotly, psych, reactome.db,
rmarkdown, Rtsne, sankey, scattermore (>= 0.7), Seurat,
SeuratObject, SingleCellExperiment, SummarizedExperiment,
testthat, viridis