parallel, ridge, car, glmnet, pls, sva, preprocessCore,
GenomicFeatures, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, maftools, genefilter, gdata,
tidyverse, readxl, TCGAbiolinks, BiocGenerics, GenomicRanges,
IRanges, S4Vectors
parallel, ridge, car, glmnet, pls, sva, preprocessCore,
GenomicFeatures, genefilter, gdata, tidyverse, readxl,
BiocGenerics, GenomicRanges, IRanges, S4Vectors, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, maftools
parallel, ridge, car, glmnet, pls, sva, preprocessCore,
GenomicFeatures, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, tidyverse, TCGAbiolinks,
BiocGenerics, GenomicRanges, IRanges, S4Vectors
knitr, rmarkdown, gdata, genefilter, maftools, readxl,
testthat (>= 3.0.0)