R (>= 4.0.0), methods, SeuratObject (>= 5.0.0)
R (>= 4.0.0), methods, SeuratObject (>= 5.0.2)
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, e1071, dplyr,
RColorBrewer, MASS, irlba, reshape2, gridExtra, gplots, gdata,
Rcpp, tclust, ranger, compositions, NMF, NMOF, dtw, SDMTools,
plotly, diffusionMap, Hmisc, tidyr, ggjoy
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
ranger, NMF, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
ggjoy
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
ranger, NMF, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
ggridges
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
ranger, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
ggridges, metap
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, RANN, caret, dplyr,
RColorBrewer, MASS, irlba, reshape2, gridExtra, gplots, gdata,
Rcpp, tclust, ranger, dtw, SDMTools, plotly, diffusionMap,
Hmisc, tidyr, ggridges, metap, lmtest, cluster, fitdistrplus,
png, doSNOW, foreach
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, RANN, caret, dplyr,
RColorBrewer, MASS, irlba, reshape2, gplots, gdata, Rcpp,
tclust, ranger, dtw, SDMTools, plotly, diffusionMap, Hmisc,
tidyr, ggridges, metap, lmtest, cluster, fitdistrplus, png,
doSNOW, reticulate, foreach
methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
ape, VGAM, pbapply, igraph, FNN, RANN, caret, dplyr,
RColorBrewer, MASS, irlba, reshape2, gplots, gdata, Rcpp,
tclust, ranger, dtw, SDMTools, plotly, diffusionMap, Hmisc,
tidyr, ggridges, metap, lmtest, cluster, fitdistrplus, png,
doSNOW, reticulate, foreach, hdf5r
methods, ROCR, mixtools, lars, ica, tsne, Rtsne, fpc, ape,
pbapply, igraph, RANN, dplyr, RColorBrewer, MASS, irlba,
reshape2, gplots, Rcpp (>= 0.11.0), dtw, SDMTools, plotly,
diffusionMap, Hmisc, tidyr, ggridges, metap, lmtest, cluster,
fitdistrplus, png, doSNOW, reticulate, foreach, hdf5r
methods, ROCR, mixtools, lars, ica, tsne, Rtsne, fpc, ape,
pbapply, igraph, RANN, dplyr, RColorBrewer, MASS, irlba,
reshape2, gplots, Rcpp (>= 0.11.0), dtw, SDMTools, plotly,
Hmisc, httr, tidyr, ggridges, metap, lmtest, cluster,
fitdistrplus, png, doSNOW, reticulate, foreach, hdf5r
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, ica, igraph, irlba, KernSmooth, lmtest, MASS, Matrix (>=
1.2.14), metap, pbapply, plotly, png, RANN, RColorBrewer, Rcpp,
reticulate, rlang, ROCR, rsvd, Rtsne, scales, sctransform (>=
0.2.0), SDMTools, stats, tools, tsne, utils
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, ica, igraph, irlba, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), metap, pbapply, plotly, png,
RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR,
rsvd, Rtsne, scales, sctransform (>= 0.2.0), SDMTools, stats,
tools, tsne, utils, uwot
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, httr, ica, igraph, irlba, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), metap, pbapply, plotly, png,
RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR,
rsvd, Rtsne, scales, sctransform (>= 0.2.0), SDMTools, stats,
tools, tsne, utils, uwot
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, httr, ica, igraph, irlba, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), metap, pbapply, plotly, png,
RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR,
rsvd, Rtsne, scales, sctransform (>= 0.2.0), SDMTools, stats,
tools, tsne, utils, uwot (>= 0.1.5)
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, httr, ica, igraph, irlba, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), metap, pbapply, plotly, png,
RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR,
rsvd, Rtsne, scales, sctransform (>= 0.2.0), stats, tools,
tsne, utils, uwot (>= 0.1.5)
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, httr, ica, igraph, irlba, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), metap, patchwork, pbapply,
plotly, png, RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate,
rlang, ROCR, rsvd, Rtsne, scales, sctransform (>= 0.2.0),
stats, tools, tsne, utils, uwot (>= 0.1.5)
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, httr, ica, igraph, irlba, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), patchwork, pbapply, plotly,
png, RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang,
ROCR, rsvd, Rtsne, scales, sctransform (>= 0.2.0), stats,
tools, tsne, utils, uwot (>= 0.1.5)
ape, cluster, cowplot, fitdistrplus, future, future.apply,
ggplot2 (>= 3.0.0), ggrepel, ggridges, graphics, grDevices,
grid, httr, ica, igraph, irlba, jsonlite, KernSmooth, leiden
(>= 0.3.1), lmtest, MASS, Matrix (>= 1.2-14), miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy, reticulate, rlang, ROCR, rsvd, Rtsne, scales,
sctransform (>= 0.2.0), shiny, spatstat, stats, tibble, tools,
utils, uwot (>= 0.1.5)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy, reticulate, rlang, ROCR, rsvd, Rtsne, scales,
sctransform (>= 0.2.0), shiny, spatstat, stats, tibble, tools,
utils, uwot (>= 0.1.5)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy, reticulate, rlang, ROCR, rsvd, Rtsne, scales,
sctransform (>= 0.3.0), shiny, spatstat, stats, tibble, tools,
utils, uwot (>= 0.1.5)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy, reticulate, rlang, ROCR, rsvd, Rtsne, scales,
scattermore (>= 0.7), sctransform (>= 0.3.1), shiny, spatstat,
stats, tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy (>= 0.0.18), reticulate, rlang, ROCR, Rtsne,
scales, scattermore (>= 0.7), sctransform (>= 0.3.2),
SeuratObject, shiny, spatstat, stats, tibble, tools, utils,
uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy (>= 0.0.18), reticulate, rlang, ROCR, Rtsne,
scales, scattermore (>= 0.7), sctransform (>= 0.3.2),
SeuratObject, shiny, spatstat.core, spatstat.geom, stats,
tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp, RcppAnnoy (>= 0.0.18), reticulate, rlang, ROCR, Rtsne,
scales, scattermore (>= 0.7), sctransform (>= 0.3.2),
SeuratObject (>= 4.0.2), shiny, spatstat.core, spatstat.geom,
stats, tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, Rtsne, scales, scattermore (>= 0.7), sctransform (>=
0.3.2), SeuratObject (>= 4.0.2), shiny, spatstat.core,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, Rtsne, scales, scattermore (>= 0.7), sctransform (>=
0.3.2), SeuratObject (>= 4.0.4), shiny, spatstat.core,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, Rtsne, scales, scattermore (>= 0.7), sctransform (>=
0.3.3), SeuratObject (>= 4.0.4), shiny, spatstat.core,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.2-14), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, Rtsne, scales, scattermore (>= 0.7), sctransform (>=
0.3.3), SeuratObject (>= 4.1.0), shiny, spatstat.core,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.9)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.5.0), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, Rtsne, scales, scattermore (>= 0.7), sctransform (>=
0.3.4), SeuratObject (>= 4.1.2), shiny, spatstat.core,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.14)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.5-0), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, Rtsne, scales, scattermore (>= 0.7), sctransform (>=
0.3.5), SeuratObject (>= 4.1.3), shiny, spatstat.explore,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.14)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.5-0), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, progressr, RANN,
RColorBrewer, Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18),
reticulate, rlang, ROCR, Rtsne, scales, scattermore (>= 0.7),
sctransform (>= 0.3.5), SeuratObject (>= 4.1.3), shiny,
spatstat.explore, spatstat.geom, stats, tibble, tools, utils,
uwot (>= 0.1.14)
cluster, cowplot, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, MASS, Matrix (>= 1.5-0), matrixStats, miniUI,
patchwork, pbapply, plotly (>= 4.9.0), png, progressr, purrr,
RANN, RColorBrewer, Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18),
reticulate, rlang, ROCR, Rtsne, scales, scattermore (>= 1.2),
sctransform (>= 0.4.0), SeuratObject (>= 4.1.4), shiny,
spatstat.explore, spatstat.geom, stats, tibble, tools, utils,
uwot (>= 0.1.14)
cluster, cowplot, fastDummies, fitdistrplus, future,
future.apply, generics (>= 0.1.3), ggplot2 (>= 3.3.0), ggrepel,
ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba,
jsonlite, KernSmooth, leiden (>= 0.3.1), lifecycle, lmtest,
MASS, Matrix (>= 1.5-0), matrixStats, miniUI, patchwork,
pbapply, plotly (>= 4.9.0), png, progressr, purrr, RANN,
RColorBrewer, Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), RcppHNSW,
reticulate, rlang, ROCR, RSpectra, Rtsne, scales, scattermore
(>= 1.2), sctransform (>= 0.4.1), shiny, spatstat.explore,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.10)
cluster, cowplot, fastDummies, fitdistrplus, future,
future.apply, generics (>= 0.1.3), ggplot2 (>= 3.3.0), ggrepel,
ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba,
jsonlite, KernSmooth, leidenbase, lifecycle, lmtest, MASS,
Matrix (>= 1.5-0), matrixStats, miniUI, patchwork, pbapply,
plotly (>= 4.9.0), png, progressr, RANN, RColorBrewer, Rcpp (>=
1.0.7), RcppAnnoy (>= 0.0.18), RcppHNSW, reticulate, rlang,
ROCR, RSpectra, Rtsne, scales, scattermore (>= 1.2),
sctransform (>= 0.4.1), shiny, spatstat.explore, spatstat.geom,
stats, tibble, tools, utils, uwot (>= 0.1.10)
cluster, cowplot, fastDummies, fitdistrplus, future,
future.apply, generics (>= 0.1.3), ggplot2 (>= 3.3.0), ggrepel,
ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba,
jsonlite, KernSmooth, lifecycle, lmtest, MASS, Matrix (>=
1.5-0), matrixStats, miniUI, patchwork, pbapply, plotly (>=
4.9.0), png, progressr, RANN, RColorBrewer, Rcpp (>= 1.0.7),
RcppAnnoy (>= 0.0.18), RcppHNSW, reticulate, rlang, ROCR,
RSpectra, Rtsne, scales, scattermore (>= 1.2), sctransform (>=
0.4.1), shiny, spatstat.explore, spatstat.geom, stats, tibble,
tools, utils, uwot (>= 0.1.10)
Rcpp (>= 0.11.0), RcppEigen, RcppProgress
testthat, SummarizedExperiment, MAST, DESeq2, MetaDE
testthat, loomR, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2
testthat, loomR, phateR, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2
gdata, VGAM, tclust, testthat, caret, ranger, loomR, phateR,
S4Vectors, SummarizedExperiment, SingleCellExperiment, MAST,
DESeq2
gdata, VGAM, tclust, testthat, caret, ranger, loomR, phateR,
S4Vectors, made4, SummarizedExperiment, SingleCellExperiment,
MAST, DESeq2, destiny
loomR, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, GenomicRanges,
GenomeInfoDb, IRanges, rtracklayer
loomR, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, GenomicRanges,
GenomeInfoDb, IRanges, rtracklayer, monocle, Biobase, VGAM
loomR, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, monocle,
Biobase, VGAM
loomR, SDMTools, testthat, hdf5r, S4Vectors,
SummarizedExperiment, SingleCellExperiment, MAST, DESeq2,
BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges,
rtracklayer, monocle, Biobase, VGAM
loomR, SDMTools, testthat, hdf5r, S4Vectors,
SummarizedExperiment, SingleCellExperiment, MAST, DESeq2,
BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges,
rtracklayer, monocle, Biobase, VGAM, limma, metap
loomR, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2,
monocle, Biobase, VGAM, limma, metap
loomR, ape, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2,
monocle, Biobase, VGAM, limma, metap
ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2,
monocle, Biobase, VGAM, limma, metap, enrichR, mixtools
ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2,
monocle, Biobase, VGAM, limma, metap, enrichR, mixtools,
ggrastr
ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment,
SingleCellExperiment, MAST, DESeq2, BiocGenerics,
GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2,
monocle, Biobase, VGAM, limma, metap, enrichR, mixtools,
ggrastr, data.table, R.utils
ape, BPCells, rsvd, testthat, hdf5r, S4Vectors,
SummarizedExperiment, SingleCellExperiment, MAST, DESeq2,
BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges,
rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap,
enrichR, mixtools, ggrastr, data.table, R.utils, presto,
DelayedArray, harmony
ape, arrow, BPCells, rsvd, testthat, hdf5r, S4Vectors,
SummarizedExperiment, SingleCellExperiment, MAST, DESeq2,
BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges,
rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap,
enrichR, mixtools, ggrastr, data.table, R.utils, presto,
DelayedArray, harmony
ape, arrow, Biobase, BiocGenerics, BPCells, data.table,
DESeq2, DelayedArray, enrichR, GenomicRanges, GenomeInfoDb,
glmGamPoi, ggrastr, harmony, hdf5r, IRanges, limma, MAST,
metap, mixtools, monocle, presto, rsvd, R.utils, Rfast2,
rtracklayer, S4Vectors, sf (>= 1.0.0), SingleCellExperiment,
SummarizedExperiment, testthat, VGAM
ape, arrow, base64enc, Biobase, BiocGenerics, BPCells,
data.table, DESeq2, DelayedArray, enrichR, GenomicRanges,
GenomeInfoDb, glmGamPoi, ggrastr, harmony, hdf5r, IRanges,
leidenbase, limma, magrittr, MAST, metap, mixtools, monocle,
presto, rsvd, R.utils, Rfast2, rtracklayer, S4Vectors, sf (>=
1.0.0), sp, SingleCellExperiment, SummarizedExperiment,
testthat, VGAM