BiocGenerics, Biostrings, dplyr, ggplot2, knitr, jsonlite,
Matrix, plyr, reshape2, rmarkdown, seqinr, Seurat,
SeuratObject, stringr, tibble, tidyr, utils, useful
BiocGenerics, Biostrings, dplyr, ggplot2, jsonlite, knitr,
Matrix(>= 1.3-3), plyr, reshape2, seqinr, stringr, Seurat,
SeuratObject, tibble, tidyr, utils, useful
BiocGenerics, Biostrings, cowplot, dplyr, ggplot2, jsonlite,
knitr, Matrix(>= 1.3-3), plyr, reshape2, seqinr, stringr,
Seurat, SeuratObject, tibble, tidyr, utils, useful
BiocGenerics, Biostrings, cowplot, dplyr, ggplot2, ggtree,
jsonlite, Matrix(>= 1.3-3), doParallel, foreach, plyr,
reshape2, seqinr, stringr, Seurat, SeuratObject, tibble, tidyr,
utils, useful
Biostrings, cowplot, dplyr, ggplot2, ggtree, jsonlite, knitr,
magrittr, Matrix(>= 1.3-3), plyr, reshape2, seqinr, Seurat,
SeuratObject(>= 4.1.3), stringr, tibble, tidyr, utils, useful
Biostrings, cowplot, dplyr, ggalluvial, ggplot2, ggseqlogo,
ggtree, jsonlite, knitr, magrittr, Matrix(>= 1.3-3), plyr,
reshape2, seqinr, Seurat, SeuratObject(>= 4.1.3), stringdist,
stringr, tibble, tidyr, utils, useful
AnnotationDbi, ape, circlize, cowplot, data.table,
doParallel, fda.usc, fgsea, ggrepel, ggridges, ggseqlogo, grid,
gridExtra, harmony, igraph, IRanges, limma, keras, methods,
msigdbr, org.Mm.eg.db, pheatmap, phytools, purrr, scales,
SummarizedExperiment, stringdist, tensorflow, vegan, testthat
(>= 3.0.0)
AnnotationDbi, ape, circlize, cowplot, data.table,
doParallel, fda.usc, fgsea, ggalluvial, ggtree, ggrepel,
ggridges, ggseqlogo, grid, gridExtra, harmony, igraph, IRanges,
limma, keras, methods, msigdbr, org.Mm.eg.db, pheatmap,
phytools, purrr, readxl, reticulate, scales,
SummarizedExperiment, stringdist, tensorflow, tidytree,
tidyselect, vegan, testthat (>= 3.0.0)
AnnotationDbi, ape, circlize, data.table, doParallel,
fda.usc, fgsea, ggalluvial, ggtree, ggrepel, ggridges,
ggseqlogo, grid, gridExtra, harmony, igraph, IRanges, limma,
keras, methods, msigdbr, org.Hs.eg.db, org.Mm.eg.db, pheatmap,
phytools, purrr, readr, readxl, reticulate, scales,
SummarizedExperiment, stringdist, tensorflow, tidytree,
tidyselect, vegan, testthat (>= 3.0.0)
AnnotationDbi, ape, bigstatsr, bio3d, Biobase, biomaRt,
caret, circlize, colorspace, data.table, dichromat, e1071,
edgeR, fda.usc, fgsea, ggalluvial, ggpubr, ggrepel, ggridges,
ggseqlogo, graphkernels, graphlayouts, grid, gridExtra,
harmony, igraph, iNEXT, IRanges, limma, keras, kmer, knitr,
magrittr, Matrix.utils, methods, monocle3, msigdbr, naivebayes,
org.Hs.eg.db, org.Mm.eg.db, Peptides, phangorn, pheatmap,
phytools, pROC, ProjecTILs, protr, purrr, r3dmol, randomForest,
RColorBrewer, readbitmap, readr, readxl, reticulate,
rstudioapi, rlang, Rtsne, scales, scuttle, SeuratWrappers,
SingleCellExperiment, slingshot, ssh, SummarizedExperiment,
stringdist, tensorflow, tidygraph, tidytree, tidyselect, umap,
vanddraabe, vegan, viridis, xgboost, yardstick, testthat (>=
3.0.0)
AnnotationDbi, ape, BiocGenerics, biomaRt, circlize, cluster,
doParallel, fgsea, ggalluvial, ggrepel, ggridges, gridExtra,
harmony, igraph, iNEXT, limma, kmer, msigdbr, phangorn,
pheatmap, phytools, purrr, readr, readxl, rstudioapi, Rtsne,
scales, sf, SingleCellExperiment, slingshot, stringdist,
tidytree, tidyselect, tidyverse, umap, vegan, viridis, testthat
(>= 3.0.0),
AnnotationDbi, ape, BiocGenerics, biomaRt, circlize, cluster,
doParallel, fgsea, ggrepel, ggridges, gridExtra, harmony,
igraph, iNEXT, limma, kmer, msigdbr, phangorn, pheatmap,
phytools, purrr, readr, readxl, rstudioapi, Rtsne, scales, sf,
SingleCellExperiment, slingshot, tidytree, tidyselect,
tidyverse, umap, vegan, viridis, testthat (>= 3.0.0),