R (>= 3.2.0), parallel, GenomicAlignments
bitops, tools, methods, S4Vectors, IRanges, GenomicRanges,
ShortRead, Rsamtools, Biostrings, gtools
bitops, tools, methods, S4Vectors, IRanges, GenomicRanges,
ShortRead, Rsamtools, Biostrings, gtools, rtracklayer,
GenomeInfoDb