fcab1e771fa7dbc7d364f0c81907779c *DESCRIPTION
75de0fe6613c0cb7267d4115dec0159f *LICENSE
4da93cee38db1a6e1997f7affb35903f *NAMESPACE
e27357e7f0fe869313e7e2c6ac2ec509 *R/RcppExports.R
1d386d432cc2cb4ef5d34c62c7d8e566 *R/data.R
f48745775f6ff4077a0ef5509e78fa37 *R/helpers.R
5ad426f32cdc63c972feafece79f15a4 *R/utils.R
0b9ef58de02096ee059f61aad8441b8c *README.md
b69c2061dc2eebd3b976e6f374507800 *build/vignette.rds
4ffaa2ee75baea64b9069037046f05f6 *data/Evers_CRISPRn_RT112.rda
606faf9f32351f73e2ab63545d51f9d7 *data/Sanson_CRISPRn_A375.rda
393be4aedee3a71e120492ce60c16eea *inst/doc/cb2-input-handling.R
47be5921409c260e4cc1d1ecfbe3fb88 *inst/doc/cb2-input-handling.Rmd
d17ab7490ad00ef03581886061ae9cce *inst/doc/cb2-input-handling.html
b04b61e81ccb36550f7148e0c5eb1cff *inst/doc/cb2-tutorial.R
dc1a9596f8d9f47aa30f27167c9d209d *inst/doc/cb2-tutorial.Rmd
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7caa3925001fcd5b96b0005003547eaf *inst/extdata/toydata/Base1.fastq
6cf0a8ac82eae578e9d51c162cafe613 *inst/extdata/toydata/Base2.fastq
1f18ec364a0e9cd12293a8cc61046188 *inst/extdata/toydata/High1.fastq
f38f7584d527b80fba902f050cf28588 *inst/extdata/toydata/High2.fastq
5bd8c3a850f938fc81165ecbaca4abb5 *inst/extdata/toydata/Low1.fastq
fc3b83b4506f3d7b1bb9f052902e94ec *inst/extdata/toydata/Low2.fastq
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ae9720c2d7649392e2d51d96b6068695 *inst/extdata/toydata/gzipped/High1.fastq.gz
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db9a1f953df9bda510fec8bad50d4f87 *inst/extdata/toydata/gzipped/Low1.fastq.gz
dc2e96e31aa51400381980f686b7f4dc *inst/extdata/toydata/gzipped/Low2.fastq.gz
26e2347380412f059eab3394a1b308e2 *inst/extdata/toydata/sg2gene.csv
ac57ee2d93bc9d8ff564c5dbbc3cef47 *inst/extdata/toydata/small_sample.fasta
4c0ef094001d93f4ad1e27efd69f048e *inst/extdata/toydata/small_sample_dup.fasta
36f87336a7ed990bea4a8c006bbebab1 *man/Evers_CRISPRn_RT112.Rd
e8664f5bab1e58392333c633ad5a7705 *man/Sanson_CRISPRn_A375.Rd
7c70e3848507b2e9facadcb244701739 *man/calc_mappability.Rd
ccceb3645f09008c24894a8b161e2bad *man/figures/hexsticker.png
4effad862ee930776564210caa832b64 *man/fit_ab.Rd
6043f53bf593e84fa5f8b79a4a0e9618 *man/get_CPM.Rd
9a62ffd0372f942b987dd9c8fef4c963 *man/join_count_and_design.Rd
e16bc54da0e5daa330810173b4a58e1e *man/measure_gene_stats.Rd
5c8b955e2346784ee859107acd79d018 *man/measure_sgrna_stats.Rd
0c4071e4abb8f23ca51d02b19f60a567 *man/plot_PCA.Rd
174fb81a4990dfdda14e44eb8ea7162a *man/plot_corr_heatmap.Rd
879e19551331542d9bd1c8d91bbde416 *man/plot_count_distribution.Rd
2c68546e05c76867ffcaa8788d052c79 *man/plot_dotplot.Rd
6818954ca110bc9d2cd5ba144e352e2f *man/quant.Rd
adfe7c33bb635ee1d187e76fd2f1ef4b *man/run_estimation.Rd
ac5f7168b803a2536e2e414e41841d66 *man/run_sgrna_quant.Rd
e994126b050778697011822cc7f4a74c *src/AdaptiveHash.h
611367b4daa002be93ab80c60decd026 *src/CB2.cpp
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars.win
3ec6c47ffeb701556f981c392b90aec8 *src/RcppExports.cpp
3c76a7a8babb4b4526c2bf87bc41ff88 *tests/testthat.R
b60326bc8c0060b9376bbe470087c9c6 *tests/testthat/test.toydata.R
47be5921409c260e4cc1d1ecfbe3fb88 *vignettes/cb2-input-handling.Rmd
dc1a9596f8d9f47aa30f27167c9d209d *vignettes/cb2-tutorial.Rmd
819461df2a1dbebcf89cd7348755aa8f *vignettes/references.bib
