e402d07979542bdf757d93ef844d310f *DESCRIPTION
ba5a0cc2f985c043ffd1f5d7f4340497 *NAMESPACE
391f931190fba071b5820e4f5fa0c1a4 *R/data.R
c772c7e2ac31b679ea4ff01cdc85f97e *R/defcon.R
411ebfedd51550cc95b79ad46053c96a *R/generate_feature.R
41c09d885cb307a6b4fa1afefce6d411 *R/read_vcf.R
4a14d7a1cef3060a7fb13e99d517e720 *R/rho_est.R
efafc7cb893b4e61e08d3e5ccd0eaaee *R/summary_vcf.R
882fab2726081d7ecea656da3af3d820 *R/train_ct.R
281160af53f0f77843eef77f7aef710b *R/update_vcf.R
ee076e00c62a477c8e4e3a6f593c47cd *README.md
e92adfd5499610f98cf0e14589ba7b81 *data/config_df.RData
db8fb3929d667b29bae48adb0e7cb54f *data/svm_class_model.RData
1796991ca93485b0d5551a2635b9646b *data/svm_regression_model.RData
fa6bce5797e399cf80207a4252a842e8 *data/vcf_example.RData
c6ff521654dc587b74a7032ee2072908 *inst/extdata/example.vcf.gz
9b08f14d1b6b50afd7f423c1053d97da *man/config_df.Rd
243c3bb00208d8122aba341621c96fcd *man/defcon.Rd
43b202ad720a691b2eb4ec9c972cb255 *man/generate_feature.Rd
9673c3128074dcd0a74dc08f3b04b269 *man/getAlt2.Rd
514de8a7759c14d86e7fec59dbba0f3a *man/getAnnoRate.Rd
34e83ac31c6496e13e3caf4e4c90f711 *man/getAvgLL.Rd
c938e8539b6d2cc4af2db4db977b8346 *man/getLowDepth.Rd
75c5ba75056e0612bf8551e155b2bb20 *man/getRatio.Rd
78589eb934005080951ff81245ed2058 *man/getSNVRate.Rd
5e67f00d4d97c8031e8fb8d971d12771 *man/getSkewness.Rd
7d18db03a68849384f7fb4bb80d35aab *man/getVar.Rd
245705c066024826f5ee5ead2f84af12 *man/locateFile.Rd
782a63604a4aa879b94ab443d8d1155a *man/negll.Rd
bddd2e2e5610364338bd32ede4c043c8 *man/readGATK.Rd
e47455dccced75f344d51beca9f5ccba *man/readStrelka.Rd
3e11bcd0a262ead483d9664ec1c2c267 *man/readVarDict.Rd
979b92610d1c38541eb0dadb0f429ace *man/readVarPROWL.Rd
4dc04935c108cb0d8492bd69419212c1 *man/read_vcf.Rd
25faa94ed4aa68498ea0d972be4e2d3b *man/rho_est.Rd
c585497cceb85ef326b8c1bde6dba015 *man/rmCNVinVCF.Rd
28c11247f869f6e636bc58dd46f8c857 *man/rmChangePoint.Rd
c2dcfa7b81cfe57ec1974456f9899c28 *man/summary_vcf.Rd
1ea419482528030b444a9d1f38956e1e *man/svm_class_model.Rd
cbf29d17ad187b1e6d1963bfaf1a790e *man/svm_regression_model.Rd
0d52eed0c8e672f2d87e78dfce5588b4 *man/train_ct.Rd
0d808161cdc090b9becad479ce8cad68 *man/update_vcf.Rd
ff0baec20cf95332e5f8f905961e2793 *man/vcf_example.Rd
