Stratified Prevalence Comparison Across OMOP CDM Datasets

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Documentation for package ‘syrona’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

apply_cohort_filter	Apply OHDSI cohort filtering to CDM table references.
build_forest_detail	Build a per-year forest plot for a single concept
build_forest_overview	Build an overview forest plot paired with the heatmap
build_forest_summary	Build a compact F/M/Both forest plot for a single concept
build_heatmap	Build an interactive heatmap of prevalence ratios
build_point_diff	Build a dumbbell chart showing absolute prevalence values
build_pr_distribution	Build a PR distribution histogram from meta_summary data
build_pr_distribution_chapters	Build a faceted PR distribution - one small histogram per chapter
build_pyramid	Build an interactive population pyramid
cohort_summary	Get summary statistics for a cohort.
compare_all	Run the full comparison pipeline for two datasets across available domains.
compare_meta_agegroups	Meta-analysis across years: one row per concept_id x sex x age_group.
compare_meta_by_sex	Meta-analysis across age groups: one row per concept_id x sex.
compare_meta_summary	Meta-analysis across sexes: one row per concept_id (sex = "Both").
compare_yearly	Compare two datasets at the per-year stratum level.
create_caresite_cohort	Create an OHDSI cohort from a care site.
delete_cohort	Delete a cohort from the cohort table.
extract_all	Run the full source data extraction pipeline.
format_fold	Format a log2 prevalence ratio as a fold difference string
format_pval	Format p-values in Nature style
insert_cohort	Insert a cohort from a local data frame.
list_care_sites	List care sites with patient counts.
list_comparisons	List available comparisons.
list_datasets	List all available datasets.
load_comparison	Load a previously saved comparison from CSV.
load_dataset	Load a previously saved dataset from CSV.
load_syrona_theme	Load all Syrona design tokens into the calling environment
run_app	Run the Syrona dashboard
syrona_connect	Connect to a DuckDB OMOP CDM.
syrona_connect_pg	Connect to a PostgreSQL OMOP CDM.
syrona_disconnect	Disconnect from an OMOP CDM database.
truncate_name	Truncate a concept name to a maximum number of characters
weight_color	Map population weight (%) to a hex color on a log-scale gradient