* using log directory 'd:/Rcompile/CRANpkg/local/4.3/OmopSketch.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'OmopSketch/DESCRIPTION' ... OK
* this is package 'OmopSketch' version '0.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmopSketch' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [40s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [117s] ERROR
  Running 'testthat.R' [117s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(OmopSketch)
  > 
  > test_check("OmopSketch")
  Starting 2 test processes
  [ FAIL 4 | WARN 0 | SKIP 20 | PASS 82 ]
  
  ══ Skipped tests (20) ══════════════════════════════════════════════════════════
  • On CRAN (20): 'test-mockOmopSketch.R:2:3', 'test-plotInObservation.R:2:3',
    'test-summariseClinicalRecords.R:2:3',
    'test-summariseClinicalRecords.R:81:3',
    'test-summariseClinicalRecords.R:213:3', 'test-summariseInObservation.R:2:3',
    'test-summariseInObservation.R:96:3', 'test-summariseInObservation.R:148:3',
    'test-summariseInObservation.R:184:3', 'test-summariseConceptCounts.R:2:3',
    'test-summariseConceptCounts.R:428:3', 'test-summariseOmopSnapshot.R:2:3',
    'test-summariseOmopSnapshot.R:10:3',
    'test-summarisePopulationCharacteristics.R:2:3',
    'test-summarisePopulationCharacteristics.R:149:3',
    'test-summarisePopulationCharacteristics.R:165:3',
    'test-summariseRecordCount.R:2:3', 'test-summariseRecordCount.R:92:3',
    'test-summariseRecordCount.R:112:3', 'test-summariseRecordCount.R:189:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-summarisePopulationCharacteristics.R:125:3'): summarisePopulationCharacteristics() works ──
  Expected `... <- NULL` to run without any errors.
  i Actually got a <rlang_error> with text:
    `variable_name` must not contain NA.
  ── Error ('test-summarisePopulationCharacteristics.R:130:3'): summarisePopulationCharacteristics() works ──
  Error in `eval(code, test_env)`: object 'summarisedPopulation' not found
  Backtrace:
      ▆
   1. ├─testthat::expect_true(inherits(summarisedPopulation, "summarised_result")) at test-summarisePopulationCharacteristics.R:130:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─base::inherits(summarisedPopulation, "summarised_result")
  ── Failure ('test-summarisePopulationCharacteristics.R:183:3'): summarisePopulationCharacteristics() works with mockOmopSKetch ──
  Expected `summarisedPopulation <- summarisePopulationCharacteristics(cdm = cdm)` to run without any errors.
  i Actually got a <rlang_error> with text:
    `variable_name` must not contain NA.
  ── Error ('test-summarisePopulationCharacteristics.R:186:3'): summarisePopulationCharacteristics() works with mockOmopSKetch ──
  Error in `eval(code, test_env)`: object 'summarisedPopulation' not found
  Backtrace:
      ▆
   1. ├─testthat::expect_true(inherits(summarisedPopulation, "summarised_result")) at test-summarisePopulationCharacteristics.R:186:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─base::inherits(summarisedPopulation, "summarised_result")
  
  [ FAIL 4 | WARN 0 | SKIP 20 | PASS 82 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [264s] ERROR
Error(s) in re-building vignettes:
--- re-building 'A-summarise_clinical_tables_records.Rmd' using rmarkdown
--- finished re-building 'A-summarise_clinical_tables_records.Rmd'

--- re-building 'B-summarise_concept_counts.Rmd' using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB

--- finished re-building 'B-summarise_concept_counts.Rmd'

Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building 'C-summarise_pop_characteristics.Rmd' using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB


Quitting from lines 57-60 [unnamed-chunk-3] (C-summarise_pop_characteristics.Rmd)
Error: processing vignette 'C-summarise_pop_characteristics.Rmd' failed with diagnostics:
`variable_name` must not contain NA.
--- failed re-building 'C-summarise_pop_characteristics.Rmd'

Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
  'C-summarise_pop_characteristics.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 2 ERRORs