# Bayesian Whole-Genome Regression

## Documentation for package ‘bWGR’ version 2.2.18

- DESCRIPTION file.
- Code demos. Use demo() to run them.

## Help Pages

A B C E F G H I K L M N P S T U W X Y Z

bWGR-package | Bayesian Whole-Genome Regression

## -- A --

AccByC | Additional tools

## -- B --

BayesA | MCMC Whole-genome Regression
BayesA2 | MCMC Whole-genome Regression
BayesB | MCMC Whole-genome Regression
BayesB2 | MCMC Whole-genome Regression
BayesC | MCMC Whole-genome Regression
BayesCpi | MCMC Whole-genome Regression
BayesDpi | MCMC Whole-genome Regression
BayesL | MCMC Whole-genome Regression
BayesRR | MCMC Whole-genome Regression
BayesRR2 | MCMC Whole-genome Regression
bWGR | Bayesian Whole-Genome Regression

## -- C --

chr | Tetra-seed Pods
ClusterBlup | Multivariate Regression
CNT | Additional tools

## -- E --

EigenAcc | Additional tools
EigenARC | Additional tools
EigenArcZ | Additional tools
EigenBDCSVD | Additional tools
EigenCNT | Additional tools
EigenEVD | Additional tools
EigenGAU | Additional tools
EigenGauZ | Additional tools
EigenGRM | Additional tools
EigenJacobiSVD | Additional tools
emBA | Expectation-Maximization WGR
emBB | Expectation-Maximization WGR
emBC | Expectation-Maximization WGR
emBCpi | Expectation-Maximization WGR
emBL | Expectation-Maximization WGR
emCV | Expectation-Maximization WGR
emDE | Expectation-Maximization WGR
emEN | Expectation-Maximization WGR
emGWA | Additional tools
emML | Expectation-Maximization WGR
emML2 | Expectation-Maximization WGR
emRR | Expectation-Maximization WGR
EM_recluster | Multivariate Regression

## -- F --

fam | Tetra-seed Pods
FUVBETA | Multivariate Regression

## -- G --

GAU | Additional tools
gen | Tetra-seed Pods
Get_Cluster_Corr | Multivariate Regression
GRM | Additional tools
GS2EIGEN | Mixed model solver
GSEM | Multivariate Regression
GSEN | MCMC Whole-genome Regression
GSFLM | Mixed model solver
GSRR | Mixed model solver

## -- H --

Hmat | Additional tools

## -- I --

IMP | Additional tools
IncMatrix | Multivariate Regression

## -- K --

K2X | Additional tools
KMUP | MCMC Whole-genome Regression
KMUP2 | MCMC Whole-genome Regression

## -- L --

lasso | Expectation-Maximization WGR

## -- M --

markov | Additional tools
mcmcCV | MCMC Whole-genome Regression
MEGA | Multivariate Regression
mixed | Mixed model solver
mkr | Multivariate Regression
mkr2X | Multivariate Regression
MLM | Multivariate Regression
mm | Mixed model solver
mrr | Multivariate Regression
mrr2X | Multivariate Regression
MRR3 | Multivariate Regression
MRR3F | Multivariate Regression
mrr_float | Multivariate Regression
mrr_svd | Multivariate Regression
mtgsru | Mixed model solver
mtmixed | Mixed model solver
MvSimY | Additional tools
mwgr | Multivariate Regression

## -- N --

NNS | Mixed model solver
NNSEARCH | Mixed model solver

## -- P --

PEGS | Multivariate Regression
PEGSX | Multivariate Regression
PEGSZ | Multivariate Regression
PEGSZ_sparse | Multivariate Regression
PEGS_sparse | Multivariate Regression
predict_FLMSS | Mixed model solver

## -- S --

SEM | Multivariate Regression
SibZ | Additional tools
SimGC | Additional tools
SimY | Additional tools
SimZ | Additional tools
solver1x | Multivariate Regression
solver1xF | Multivariate Regression
solver2x | Multivariate Regression
solver2xF | Multivariate Regression
SPC | Additional tools
SPM | Additional tools

## -- T --

tpod | Tetra-seed Pods

## -- U --

UVBETA | Multivariate Regression

## -- W --

wgr | MCMC Whole-genome Regression

## -- X --

XFUVBETA | Multivariate Regression
XSEMF | Multivariate Regression

## -- Y --

y | Tetra-seed Pods
YSEMF | Multivariate Regression

## -- Z --

ZFUVBETA | Multivariate Regression
ZSEMF | Multivariate Regression