Package: flocker
Title: Flexible Occupancy Estimation with Stan
Version: 1.0-2
Authors@R: c(
    person("Jacob B.", "Socolar", , "jacob.socolar@gmail.com", role = c("aut", "cre", "cph")),
    person("Simon C.", "Mills", role = "aut"),
    person("Paul-Christian", "Bürkner", role = "ctb")
  )
Description: Fit occupancy models in 'Stan' via 'brms'. The full variety
    of 'brms' formula-based effects structures are available to use in
    multiple classes of occupancy model, including single-season
    models, models with data augmentation for never-observed species,
    dynamic (multiseason) models with explicit colonization and extinction
    processes, and dynamic models with autologistic occupancy dynamics.
    Formulas can be specified for all relevant distributional terms,
    including detection and one or more of occupancy, colonization,
    extinction, and autologistic depending on the model type. Several
    important forms of model post-processing are provided.  References:
    Bürkner (2017) <doi:10.18637/jss.v080.i01>; Carpenter et al. (2017)
    <doi:10.18637/jss.v076.i01>; Socolar & Mills (2023)
    <doi:10.1101/2023.10.26.564080>.
License: BSD_3_clause + file LICENSE
URL: https://github.com/jsocolar/flocker,
        https://jsocolar.github.io/flocker/
BugReports: https://github.com/jsocolar/flocker/issues
Depends: R (>= 4.1.0)
Imports: abind, assertthat, boot, brms (>= 2.20.3), loo (>= 2.0.0),
        MASS, matrixStats, stats, utils, withr
Suggests: BH (>= 1.75.0-0), knitr, RcppEigen (>= 0.3.3.9.3), rmarkdown,
        rstan (>= 2.26.0), spelling, testthat (>= 2.1.0), tibble
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.3
Language: en-US
NeedsCompilation: no
Packaged: 2026-06-22 20:17:23 UTC; jacob
Author: Jacob B. Socolar [aut, cre, cph],
  Simon C. Mills [aut],
  Paul-Christian Bürkner [ctb]
Maintainer: Jacob B. Socolar <jacob.socolar@gmail.com>
Repository: CRAN
Date/Publication: 2026-06-22 20:40:02 UTC
Built: R 4.5.3; ; 2026-08-10 05:33:01 UTC; windows
