* using log directory 'd:/Rcompile/CRANpkg/local/4.3/soilassessment.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'soilassessment/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'soilassessment' version '0.2.6'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'soilassessment' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [15s] OK
* checking whether the package can be loaded with stated dependencies ... [14s] OK
* checking whether the package can be unloaded cleanly ... [13s] OK
* checking whether the namespace can be loaded with stated dependencies ... [13s] OK
* checking whether the namespace can be unloaded cleanly ... [14s] OK
* checking loading without being on the library search path ... [14s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [57s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [40s] ERROR
Running examples in 'soilassessment-Ex.R' failed
The error most likely occurred in:

> ### Name: depthharm
> ### Title: A function for harmonizing soil property between uniform depth
> ###   intervals in observation pits
> ### Aliases: depthharm
> 
> ### ** Examples
> 
> library(aqp)
This is aqp 2.1.0
> library(plyr)
> library(sp)

Attaching package: 'sp'

The following objects are masked from 'package:aqp':

    coordinates, coordinates<-, proj4string, proj4string<-

> x=c(rep(2.12,4),rep(2.05,4))
> y=c(rep(9.34,4),rep(8.17,4))
> pit=c(rep(1,4),rep(2,4))
> depthcode=c(1,2,3,4,1,2,3,4)
> upper=c(0,18,25,35,0,12,33,50)
> lower=c(10,25,35,67,12,33,50,100)
> pH=c(6.7,5.5,5.1,6.7,6.4,5.8,5.3,5.0)
> df=data.frame(pit,x,y,upper,lower,depthcode,pH)
> lat=df$x;lon=df$y;id=df$pit;top=df$upper;
> bottom=df$lower;horizon=df$depthcode;Varn=df$pH
> 
> soildata <- join(data.frame(id, top, bottom, Varn, horizon),
+               data.frame(id, lat, lon), type='inner')
Joining by: id
> depths(soildata) <- id ~ top + bottom
> site(soildata) <- ~ lat + lon
> coordinates(soildata) <- ~ lat + lon
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'coordinates<-' for signature '"SoilProfileCollection"'
Calls: coordinates<- -> <Anonymous>
Execution halted
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 1 ERROR