Fast and Efficient (Automated) Analysis of Sparse Omics Data

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Documentation for package ‘OmicFlow’ version 1.7.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

boxjitter_test	Create a boxplot with jittered points and statistical tests
bray	Compute Bray-Curtis Dissimilarity from a Dense or Sparse Matrix.
canberra	Compute Canberra Dissimilarity from a from a Dense or Sparse Matrix.
colormap	Color map of a variable
column_exists	Checks if given column name exists in provide table
composition_plot	Compositional plot
cosine	Compute Cosine Dissimilarity from a Dense or Sparse Matrix.
diversity	Sparse implementation of Alpha Diversity Metrics
euclidean	Compute Euclidean Dissimilarity from a from a Dense or Sparse Matrix.
hill_taxa	Sparse implementation of Hill numbers
jaccard	Compute Jaccard Dissimilarity from a Dense or Sparse Matrix.
jsd	Compute Jensen-Shannon Divergence from a Dense or Sparse Matrix.
manhattan	Compute Manhattan Dissimilarity from a Dense or Sparse Matrix.
matrix_to_dtable	Converting a Matrix to data.table
metagenomics	Sub-class metagenomics
omics	Superclass omics
ordination_plot	Ordination plot
pairwise_adonis	Pairwise adonis2 (PERMANOVA)
pairwise_anosim	Pairwise ANOSIM
plot_pairwise_stats	Creates barplot from 'pairwise_adonis' or 'pairwise_anosim'
proteomics	Sub-class proteomics
unifrac	Compute UniFrac Dissimilarity from a Dense or Sparse Matrix.
volcano_plot	Volcano plot