* using log directory 'd:/Rcompile/CRANpkg/local/4.5/bayesGAM.Rcheck' * using R Under development (unstable) (2024-08-02 r86969 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bayesGAM/DESCRIPTION' ... OK * this is package 'bayesGAM' version '0.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bayesGAM' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 13.2.0' * checking C++ specification ... OK * checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: libs 5.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [8s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) mcmc_plots.Rd:204-206: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:207-209: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:210-212: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:213-216: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:217-220: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:221-226: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:227-230: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:231-234: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:235-239: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:240-244: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:245-254: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:255-279: Lost braces in \itemize; meant \describe ? checkRd: (-1) mcmc_plots.Rd:264: Lost braces 264 | \item{\code{mcmc_neff(object, ...)}, \code{mcmc_neff_hist(object, ...)}}{ | ^ checkRd: (-1) mcmc_plots.Rd:264-272: Lost braces 264 | \item{\code{mcmc_neff(object, ...)}, \code{mcmc_neff_hist(object, ...)}}{ | ^ checkRd: (-1) mcmc_plots.Rd:273: Lost braces 273 | \item{\code{mcmc_acf(object, ...)}, \code{mcmc_acf_bar(object, ...)}}{ | ^ checkRd: (-1) mcmc_plots.Rd:273-278: Lost braces 273 | \item{\code{mcmc_acf(object, ...)}, \code{mcmc_acf_bar(object, ...)}}{ | ^ checkRd: (-1) ppc_plots.Rd:78-80: Lost braces in \itemize; meant \describe ? checkRd: (-1) ppc_plots.Rd:81-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) ppc_plots.Rd:84-86: Lost braces in \itemize; meant \describe ? checkRd: (-1) ppc_plots.Rd:87-89: Lost braces in \itemize; meant \describe ? checkRd: (-1) ppc_plots.Rd:90-92: Lost braces in \itemize; meant \describe ? checkRd: (-1) ppc_plots.Rd:93-95: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: loo_bgam.Rd: pareto-k-diagnostic, psis Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking examples ... [30s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [51s] OK Running 'testthat.R' [51s] * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [5s] NOTE Found the following HTML validation problems: getSamples.html:74:1 (getSamples.Rd:35): Warning: trimming empty