| availTCGA | Get or Check TCGA Available ProjectID, DataType and FileType |
| cohorts | Get cohorts of XenaHub object |
| datasets | Get datasets of XenaHub object |
| downloadTCGA | Easily Download TCGA Data by Several Options |
| fetch | Fetch Data from UCSC Xena Hosts |
| fetch_dataset_identifiers | Fetch Data from UCSC Xena Hosts |
| fetch_dataset_samples | Fetch Data from UCSC Xena Hosts |
| fetch_dense_values | Fetch Data from UCSC Xena Hosts |
| fetch_sparse_values | Fetch Data from UCSC Xena Hosts |
| getTCGAdata | Get TCGA Common Data Sets by Project ID and Property |
| has_probeMap | Fetch Data from UCSC Xena Hosts |
| hosts | Get hosts of XenaHub object |
| samples | Get Samples of a XenaHub object according to 'by' and 'how' action arguments |
| showTCGA | Show TCGA data structure by Project ID or ALL |
| to_snake | Convert camel case to snake case |
| UCSCXenaTools-dynamic | UCSC Xena Dynamic Objects |
| XenaBrowse | View Info of Dataset or Cohort at UCSC Xena Website Using Web browser |
| XenaData | Xena Hub Information |
| XenaDataUpdate | Get or Update Newest Data Information of UCSC Xena Data Hubs |
| XenaDownload | Download Datasets from UCSC Xena Hubs |
| XenaFilter | Filter a XenaHub Object |
| XenaGenerate | Generate and Subset a XenaHub Object from 'XenaData' |
| XenaHub | Generate a XenaHub Object |
| XenaHub-class | Class XenaHub |
| XenaPrepare | Prepare (Load) Downloaded Datasets to R |
| XenaQuery | Query URL of Datasets before Downloading |
| XenaQueryProbeMap | Query ProbeMap URL of Datasets |
| XenaScan | Scan all rows according to user input by a regular expression |
| xena_default_hosts | UCSC Xena Default Hosts |
| .p_all_cohorts | UCSC Xena Dynamic Objects |
| .p_all_datasets | UCSC Xena Dynamic Objects |
| .p_all_datasets_n | UCSC Xena Dynamic Objects |
| .p_all_field_metadata | UCSC Xena Dynamic Objects |
| .p_cohort_samples | UCSC Xena Dynamic Objects |
| .p_cohort_summary | UCSC Xena Dynamic Objects |
| .p_datasets_null_rows | UCSC Xena Dynamic Objects |
| .p_dataset_fetch | UCSC Xena Dynamic Objects |
| .p_dataset_field | UCSC Xena Dynamic Objects |
| .p_dataset_field_examples | UCSC Xena Dynamic Objects |
| .p_dataset_field_n | UCSC Xena Dynamic Objects |
| .p_dataset_gene_probes_values | UCSC Xena Dynamic Objects |
| .p_dataset_gene_probe_avg | UCSC Xena Dynamic Objects |
| .p_dataset_list | UCSC Xena Dynamic Objects |
| .p_dataset_metadata | UCSC Xena Dynamic Objects |
| .p_dataset_probe_signature | UCSC Xena Dynamic Objects |
| .p_dataset_probe_values | UCSC Xena Dynamic Objects |
| .p_dataset_samples | UCSC Xena Dynamic Objects |
| .p_dataset_samples_ndense_matrix | UCSC Xena Dynamic Objects |
| .p_dataset_sources | UCSC Xena Dynamic Objects |
| .p_dataset_status | UCSC Xena Dynamic Objects |
| .p_feature_list | UCSC Xena Dynamic Objects |
| .p_field_codes | UCSC Xena Dynamic Objects |
| .p_field_metadata | UCSC Xena Dynamic Objects |
| .p_gene_transcripts | UCSC Xena Dynamic Objects |
| .p_match_fields | UCSC Xena Dynamic Objects |
| .p_probemap_list | UCSC Xena Dynamic Objects |
| .p_probe_count | UCSC Xena Dynamic Objects |
| .p_ref_gene_exons | UCSC Xena Dynamic Objects |
| .p_ref_gene_position | UCSC Xena Dynamic Objects |
| .p_ref_gene_range | UCSC Xena Dynamic Objects |
| .p_segmented_data_range | UCSC Xena Dynamic Objects |
| .p_segment_data_examples | UCSC Xena Dynamic Objects |
| .p_sparse_data | UCSC Xena Dynamic Objects |
| .p_sparse_data_examples | UCSC Xena Dynamic Objects |
| .p_sparse_data_match_field | UCSC Xena Dynamic Objects |
| .p_sparse_data_match_field_slow | UCSC Xena Dynamic Objects |
| .p_sparse_data_match_partial_field | UCSC Xena Dynamic Objects |
| .p_sparse_data_range | UCSC Xena Dynamic Objects |
| .p_transcript_expression | UCSC Xena Dynamic Objects |
| .XenaHub | Class XenaHub |
| .xq_all_cohorts | UCSC Xena Dynamic Objects |
| .xq_all_datasets | UCSC Xena Dynamic Objects |
| .xq_all_datasets_n | UCSC Xena Dynamic Objects |
| .xq_all_field_metadata | UCSC Xena Dynamic Objects |
| .xq_cohort_samples | UCSC Xena Dynamic Objects |
| .xq_cohort_summary | UCSC Xena Dynamic Objects |
| .xq_datasets_null_rows | UCSC Xena Dynamic Objects |
| .xq_dataset_fetch | UCSC Xena Dynamic Objects |
| .xq_dataset_field | UCSC Xena Dynamic Objects |
| .xq_dataset_field_examples | UCSC Xena Dynamic Objects |
| .xq_dataset_field_n | UCSC Xena Dynamic Objects |
| .xq_dataset_gene_probes_values | UCSC Xena Dynamic Objects |
| .xq_dataset_gene_probe_avg | UCSC Xena Dynamic Objects |
| .xq_dataset_list | UCSC Xena Dynamic Objects |
| .xq_dataset_metadata | UCSC Xena Dynamic Objects |
| .xq_dataset_probe_signature | UCSC Xena Dynamic Objects |
| .xq_dataset_probe_values | UCSC Xena Dynamic Objects |
| .xq_dataset_samples | UCSC Xena Dynamic Objects |
| .xq_dataset_samples_ndense_matrix | UCSC Xena Dynamic Objects |
| .xq_dataset_sources | UCSC Xena Dynamic Objects |
| .xq_dataset_status | UCSC Xena Dynamic Objects |
| .xq_feature_list | UCSC Xena Dynamic Objects |
| .xq_field_codes | UCSC Xena Dynamic Objects |
| .xq_field_metadata | UCSC Xena Dynamic Objects |
| .xq_gene_transcripts | UCSC Xena Dynamic Objects |
| .xq_match_fields | UCSC Xena Dynamic Objects |
| .xq_probemap_list | UCSC Xena Dynamic Objects |
| .xq_probe_count | UCSC Xena Dynamic Objects |
| .xq_ref_gene_exons | UCSC Xena Dynamic Objects |
| .xq_ref_gene_position | UCSC Xena Dynamic Objects |
| .xq_ref_gene_range | UCSC Xena Dynamic Objects |
| .xq_segmented_data_range | UCSC Xena Dynamic Objects |
| .xq_segment_data_examples | UCSC Xena Dynamic Objects |
| .xq_sparse_data | UCSC Xena Dynamic Objects |
| .xq_sparse_data_examples | UCSC Xena Dynamic Objects |
| .xq_sparse_data_match_field | UCSC Xena Dynamic Objects |
| .xq_sparse_data_match_field_slow | UCSC Xena Dynamic Objects |
| .xq_sparse_data_match_partial_field | UCSC Xena Dynamic Objects |
| .xq_sparse_data_range | UCSC Xena Dynamic Objects |
| .xq_transcript_expression | UCSC Xena Dynamic Objects |