# Fit Probability Models to Forensic Survey Data

## Documentation for package ‘fitPS’ version 1.1.4

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B C D F L M P R S V Z misc

## -- A --

add | Add data to a psData object
as.data.frame.psData | Converts an object of class 'psData' to a 'data.frame'

## -- B --

bootCI | Legacy bootstrap confidence intervals or regions
bootCI.default | Legacy bootstrap confidence intervals or regions
bootCI.psData | Legacy bootstrap confidence intervals or regions
bootCI.psFit | Legacy bootstrap confidence intervals or regions
bootstrapFit | Compute a bootstrap distribution for a fitted fitPS model
bootstrapFit.psFit | Compute a bootstrap distribution for a fitted fitPS model
bootstrapProbs | Extract bootstrap probability summaries
bootstrapProbs.psBootstrap | Extract bootstrap probability summaries
bootstrapProbs.psFit | Extract bootstrap probability summaries

## -- C --

comp.survs | Compare two surveys on the basis of their shape parameters
compare.surveys | Compare two surveys on the basis of their shape parameters
compareSurveys | Compare two surveys on the basis of their shape parameters
compareSurveys.default | Compare two surveys on the basis of their shape parameters
compareSurveys.psData | Compare two surveys on the basis of their shape parameters
compareSurveys.psFit | Compare two surveys on the basis of their shape parameters
compareSurveysLRT | Compare two or more surveys on the basis of their shape parameters using a Likelihood Ratio Test
confint.psFit | S3 confint method for objects of class psFit
createPSData | Create a survey data set manually
credInt | Bayesian credible intervals or regions
credint | Bayesian credible intervals or regions

## -- D --

deviance.psFit | Extract deviance from a fitted fitPS model
DIC | Compute the deviance information criterion for a Bayesian fitPS model

## -- F --

fit | Fit a fitPS model
fitDist | Fit a Zeta Distribution to Forensic Data
fitdist | Fit a Zeta Distribution to Forensic Data
fitLogdist | Fit a logarithmic distribution to forensic data
fitlogDist | Fit a logarithmic distribution to forensic data
fitlogdist | Fit a logarithmic distribution to forensic data
fitted.psFit | S3 fitted method for an object of class 'psFit'
fitted.psPosterior | Extract posterior mean probabilities
fitZIDist | Fit a Zero-Inflated Zeta Distribution to Forensic Data
fitZIdist | Fit a Zero-Inflated Zeta Distribution to Forensic Data
fitzidist | Fit a Zero-Inflated Zeta Distribution to Forensic Data

## -- L --

logarithmicModel | Construct built-in fitPS model descriptors
logLik.psFit | Extract the maximised log-likelihood from a fitPS model fit

## -- M --

makeData | Create a survey data set manually
makePrior | Define a prior density
makePSData | Create a survey data set manually
mean.psData | An S3 method for computing the mean of clothing survey for the number of groups or size of groups
modelBayesControl | Return Bayesian fitting controls supplied by a model
modelBayesControl.logarithmicModel | Return Bayesian fitting controls supplied by a model
modelBayesControl.psModel | Return Bayesian fitting controls supplied by a model
modelBayesControl.zetaModel | Return Bayesian fitting controls supplied by a model
modelBayesControl.zizModel | Return Bayesian fitting controls supplied by a model
modelFromUnconstrained | Transform unconstrained coordinates to natural model parameters
modelFromUnconstrained.logarithmicModel | Transform unconstrained coordinates to natural model parameters
modelFromUnconstrained.psModel | Transform unconstrained coordinates to natural model parameters
modelFromUnconstrained.zetaModel | Transform unconstrained coordinates to natural model parameters
modelFromUnconstrained.zizModel | Transform unconstrained coordinates to natural model parameters
modelLogJacobian | Evaluate the log-Jacobian for the unconstrained parameter transformation
modelLogJacobian.logarithmicModel | Evaluate the log-Jacobian for the unconstrained parameter transformation
modelLogJacobian.psModel | Evaluate the log-Jacobian for the unconstrained parameter transformation
modelLogJacobian.zetaModel | Evaluate the log-Jacobian for the unconstrained parameter transformation
modelLogJacobian.zizModel | Evaluate the log-Jacobian for the unconstrained parameter transformation
modelLogLikelihood | Evaluate a model log likelihood through the shared model protocol.
modelLogPrior | Evaluate a model prior on the natural parameter scale
modelLogPrior.logarithmicModel | Evaluate a model prior on the natural parameter scale
modelLogPrior.psModel | Evaluate a model prior on the natural parameter scale
modelLogPrior.zetaModel | Evaluate a model prior on the natural parameter scale
modelLogPrior.zizModel | Evaluate a model prior on the natural parameter scale
modelMleControl | Return generic maximum-likelihood controls for a model
modelMleControl.psModel | Return generic maximum-likelihood controls for a model
modelObservationData | Convert fitPS data to the observation support required by a model.
modelParameterNames | Return the natural parameter names declared by a fitPS model.
modelProbabilities | Evaluate fitted P/S probabilities through a model descriptor.
modelToUnconstrained | Transform natural model parameters to unconstrained coordinates
modelToUnconstrained.logarithmicModel | Transform natural model parameters to unconstrained coordinates
modelToUnconstrained.psModel | Transform natural model parameters to unconstrained coordinates
modelToUnconstrained.zetaModel | Transform natural model parameters to unconstrained coordinates
modelToUnconstrained.zizModel | Transform natural model parameters to unconstrained coordinates

## -- P --

plot.psBootstrap | Plot bootstrap probability summaries
plot.psFit | S3 plot method for an object of class 'psFit'
plot.psPosterior | Plot posterior probability summaries
plotPosterior | Plot a posterior density for a fitted power-series model
plotUncertainty | Plot parameter uncertainty for a fitPS inferential result
plotUncertainty.psBayesianBootstrap | Plot parameter uncertainty for a fitPS inferential result
plotUncertainty.psBootstrap | Plot parameter uncertainty for a fitPS inferential result
plotUncertainty.psFit | Plot parameter uncertainty for a fitPS inferential result
posteriorInflation | Posterior probability of practically negligible inflation
posteriorInflation.psFit | Posterior probability of practically negligible inflation
posteriorInflation.psPosterior | Posterior probability of practically negligible inflation
posteriorProbs | Extract posterior probability summaries
posteriorProbs.psFit | Extract posterior probability summaries
posteriorProbs.psPosterior | Extract posterior probability summaries
predict.psFit | S3 predict method for an object of class 'psFit'
print.psBayesianBootstrap | Print a fitPS Bayesian Bootstrap object
print.psBootstrap | Print a fitPS bootstrap object
print.psData | S3 print method for an object of class 'psData'
print.psFit | S3 print method for an object of class 'psFit'
print.psPosterior | Print a fitPS posterior object
print.summary.psBayesianBootstrap | Summarise a fitPS Bayesian Bootstrap object
print.summary.psBootstrap | Summarise a fitPS bootstrap object
print.summary.psPosterior | Summarise a fitPS posterior object
probfun | Plug-in probability functions
psModel | Construct a public fitPS model descriptor
Psurveys | Number of Groups of Glass Data

## -- R --

readData | Read count data from file
rzeta | Generate random variates from a zeta distribution
rZIzeta | Generate zero inflated zeta random variates
rzizeta | Generate zero inflated zeta random variates

## -- S --

Ssurveys | Size of Groups of Glass Data
summary.psBayesianBootstrap | Summarise a fitPS Bayesian Bootstrap object
summary.psBootstrap | Summarise a fitPS bootstrap object
summary.psFit | S3 summary method for an object of class 'psFit'
summary.psPosterior | Summarise a fitPS posterior object
supportedPosteriorEngines | Return posterior engines supported by a fitPS model.

## -- V --

var | Variance generic
var.default | Variance generic
var.psData | An S3 method for computing the variance of clothing survey for the number of groups or size of groups

## -- Z --

zetaModel | Construct built-in fitPS model descriptors
zizModel | Construct built-in fitPS model descriptors

## -- misc --

==.psData | S3 method for objects of class 'psData'