* using log directory 'd:/Rcompile/CRANpkg/local/4.6/myTAI.Rcheck'
* using R version 4.6.0 alpha (2026-03-28 r89738 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-03-30 17:09:44 UTC
* checking for file 'myTAI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'myTAI' version '2.3.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'myTAI' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... INFO
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    doc    6.1Mb
    libs   1.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [4s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] ERROR
Running examples in 'myTAI-Ex.R' failed
The error most likely occurred in:

> ### Name: diagnose_test_robustness
> ### Title: Diagnose Test Robustness
> ### Aliases: diagnose_test_robustness
> 
> ### ** Examples
> 
> # Diagnose flatline test robustness
> p <- example_phyex_set
> robustness <- diagnose_test_robustness(stat_flatline_test, 
+                                        p |> select_genes(p@gene_ids[1:30]),
+                                        sample_sizes=c(10,20),
+                                        plot_result=FALSE,
+                                        num_reps=2)

Computing: [========================================] 100% (done)                         
Warning in dgamma(c(0.0139222951622448, 0.0139222951622448, 0.0139222951622448,  :
  NaNs produced
Error in `purrr::map()`:
ℹ In index: 1.
Caused by error in `if (ks_result$p.value > max_p_fit_v) ...`:
! missing value where TRUE/FALSE needed
Backtrace:
     ▆
  1. ├─myTAI::diagnose_test_robustness(...)
  2. │ ├─purrr::map_dbl(...)
  3. │ │ └─purrr:::map_("double", .x, .f, ..., .progress = .progress)
  4. │ │   └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
  5. │ └─purrr::map(rep(sample_sizes, each = num_reps), f)
  6. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  7. │     ├─purrr:::with_indexed_errors(...)
  8. │     │ └─base::withCallingHandlers(...)
  9. │     ├─purrr:::call_with_cleanup(...)
 10. │     └─myTAI (local) .f(.x[[i]], ...)
 11. │       └─myTAI (local) test(phyex_set, custom_null_txis = null_txis, ..., plot_result = FALSE)
 12. │         └─myTAI:::stat_generic_conservation_test(...)
 13. │           └─fitting_dist@fitting_function(null_sample)
 14. └─base::.handleSimpleError(...)
 15.   └─purrr (local) h(simpleError(msg, call))
 16.     └─cli::cli_abort(...)
 17.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [59s] OK
  Running 'testthat.R' [58s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [214s] OK
* checking PDF version of manual ... [24s] OK
* checking HTML version of manual ... [26s] OK
* DONE
Status: 1 ERROR