Fit Neutral Community Model to Microbiome or Ecological Data


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Documentation for package ‘ncmR’ version 0.3.1

Help Pages

example_data Example OTU table and grouping information for NCM demonstration
fit_ncm Fit Neutral Community Model (NCM) with optional grouping and total pooling
print.summary_ncm Print summary of NCM model
print.summary_ncm_group Print summary of NCM group results
run_app Launch the ncmR Shiny Application
scatter_plot Scatter plot for NCM results and data frames
scatter_plot.data.frame Scatter plot for NCM results and data frames
scatter_plot.default Scatter plot for NCM results and data frames
scatter_plot.NCM Scatter plot for NCM results and data frames
summary.NCM Summary method for NCM objects
summary.NCM_group Summary method for NCM group results