# Gene Set Analysis Toolkit WebGestaltR

## Documentation for package ‘WebGestaltR’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

WebGestaltR-package | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
affinityPropagation | Affinity Propagation
formatCheck | Check Format and Read Data
GOSlimSummary | GO Slim Summary
goSlimSummary | GO Slim Summary
IDMapping | ID Mapping
idMapping | ID Mapping
idToSymbol | ID Mapping
jaccardSim | Jaccard Similarity
kMedoid | kMedoid
listArchiveURL | List WebGestalt Servers
listArchiveUrl | List WebGestalt Servers
listGeneSet | List Gene Sets
listIDType | List ID Types
listIdType | List ID Types
listOrganism | List Organisms
listReferenceSet | List Reference Sets
loadGeneSet | Load gene set data
multiswGsea | Site Weighted Gene Set Enrichment Analysis
prepareGseaInput | Prepare input for standard GSEA
prepareInputMatrixGsea | Prepare Input Matrix for GSEA
readGmt | Read GMT File
swGsea | Site Weighted Gene Set Enrichment Analysis
WebGestaltR | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
WebGestaltRBatch | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
WebGestaltRMultiOmics | WebGestaltRMultiOmics
WebGestaltRMultiOmicsGSEA | Multi-omics GSEA importFrom dplyr bind_rows left_join arrange select desc importFrom readr write_tsv
WebGestaltRMultiOmicsOra | Multi-omics ORA importFrom dplyr bind_rows left_join arrange select desc importFrom readr write_tsv
WebGestaltR_batch | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
weightedSetCover | Weighted Set Cover