# Generated by roxygen2: do not edit by hand

S3method(plot,ceg)
S3method(plot,ceg_map)
S3method(plot,event_tree)
S3method(plot,reduced_ceg)
S3method(plot,staged_tree)
S3method(plot,staged_tree_priors)
S3method(print,ceg)
S3method(print,ceg_map)
S3method(print,event_tree)
S3method(print,prior_table)
S3method(print,reduced_ceg)
S3method(print,staged_tree)
S3method(print,staged_tree_priors)
S3method(print,summary_ceg_map)
S3method(summary,ceg)
S3method(summary,ceg_map)
S3method(summary,compare_ceg_models)
S3method(summary,event_tree)
S3method(summary,prior_table)
S3method(summary,reduced_ceg)
S3method(summary,staged_tree)
S3method(summary,staged_tree_priors)
export(ahc_colouring)
export(calculate_area_probabilities)
export(calculate_conditional_prob)
export(calculate_path_products)
export(compare_ceg_models)
export(compute_ceg)
export(compute_deleted_nodes)
export(compute_reduced_ceg)
export(compute_staged_tree_priors)
export(create_event_tree)
export(create_staged_tree)
export(edit_priors)
export(generate_CEG_map)
export(run_stceg)
export(specify_priors)
export(update_node_colours)
importFrom(DT,
  DTOutput,
  dataTableProxy,
  datatable,
  formatStyle,
  renderDT,
  replaceData,
  styleEqual
)
importFrom(dplyr,
  across,
  arrange,
  coalesce,
  count,
  distinct,
  everything,
  filter,
  full_join,
  group_by,
  inner_join,
  left_join,
  mutate,
  n,
  n_distinct,
  pull,
  rename,
  rowwise,
  select,
  summarise,
  summarize,
  ungroup
)
importFrom(graphics,
  arrows,
  title
)
importFrom(htmlwidgets,onRender)
importFrom(leaflet,
  addPolygons,
  addTiles,
  clearGroup,
  highlightOptions,
  leaflet,
  leafletOutput,
  leafletProxy,
  renderLeaflet
)
importFrom(magrittr,"%>%")
importFrom(purrr,
  map_chr,
  pmap
)
importFrom(sf,
  "st_crs<-",
  st_crs,
  st_read,
  st_transform
)
importFrom(shiny,
  HTML,
  actionButton,
  checkboxInput,
  column,
  conditionalPanel,
  eventReactive,
  fileInput,
  fluidRow,
  h2,
  mainPanel,
  modalButton,
  modalDialog,
  numericInput,
  observe,
  observeEvent,
  radioButtons,
  reactive,
  reactiveVal,
  reactiveValues,
  removeModal,
  renderText,
  renderUI,
  req,
  selectInput,
  shinyApp,
  showModal,
  showNotification,
  sidebarLayout,
  sidebarPanel,
  sliderInput,
  tabPanel,
  tagList,
  tags,
  textInput,
  textOutput,
  uiOutput,
  updateSelectInput
)
importFrom(shinyWidgets,
  pickerInput,
  sliderTextInput,
  updatePickerInput
)
importFrom(stats,setNames)
importFrom(utils,
  head,
  read.csv,
  tail,
  unzip
)
importFrom(visNetwork,
  renderVisNetwork,
  visEdges,
  visEvents,
  visHierarchicalLayout,
  visInteraction,
  visNetwork,
  visNetworkOutput,
  visNetworkProxy,
  visNodes,
  visOptions,
  visPhysics,
  visUnselectAll,
  visUpdateNodes
)
