* using log directory 'd:/Rcompile/CRANpkg/local/4.5/spatstat.model.Rcheck'
* using R Under development (unstable) (2024-07-14 r86899 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'spatstat.model/DESCRIPTION' ... OK
* this is package 'spatstat.model' version '3.2-11'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'spatstat.data', 'spatstat.geom', 'spatstat.random',
  'spatstat.explore', 'nlme', 'rpart'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spatstat.model' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking whether startup messages can be suppressed ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [48s] OK
* checking Rd files ... [8s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AreaInter.Rd: Fest, ragsAreaInter, rmh
  DiggleGatesStibbard.Rd: rDGS
  Extract.influence.ppm.Rd: [.ppp
  Extract.leverage.ppm.Rd: [.im
  Gcom.Rd: quadscheme, spatstat.options, fv.object, Gest
  Gres.Rd: fv.object, Gest
  Kcom.Rd: Kest, quadscheme, fv.object
  Kmodel.Rd: Kest, pcf
  Kmodel.kppm.Rd: Kest, pcf
  Kmodel.ppm.Rd: Kest, pcf
  Kres.Rd: fv.object, Kest
  MultiHard.Rd: ragsMultiHard, rmh
  Smooth.msr.Rd: density.ppp, Smooth
  Window.ppm.Rd: Window, owin.object, Window.ppp, Window.psp
  addvar.Rd: rhohat, rho2hat
  anova.ppm.Rd: quadscheme, reach
  as.fv.kppm.Rd: fv.object, plot.fv
  as.layered.msr.Rd: as.layered, layered
  as.owin.ppm.Rd: owin.object, rmh, layered
  auc.Rd: roc
  berman.test.Rd: plot.bermantest, cdf.test, quadrat.test
  cauchy.estK.Rd: Kest, rCauchy
  cauchy.estpcf.Rd: pcf.ppp, pcf, rCauchy
  cdf.test.Rd: ewcdf, plot.cdftest, quadrat.test, berman.test
  cdf.test.mppm.Rd: cdf.test, hyperframe, ewcdf, quadrat.test
  closepaircounts.Rd: closepairs
  clusterfit.Rd: Kest, pcf, Kinhom, pcfinhom
  clusterkernel.kppm.Rd: clusterfield
  clusterradius.kppm.Rd: clusterkernel
  compareFit.Rd: collapse.fv
  data.ppm.Rd: ppp.object
  detpointprocfamilyfun.Rd: fourierbasis
  diagnose.ppm.Rd: density.ppp
  domain.ppm.Rd: Window, Frame
  dppm.Rd: Kest, Kinhom, pcf, pcfinhom
  dummy.ppm.Rd: ppp.object
  effectfun.Rd: fv.object
  emend.ppm.Rd: spatstat.options
  emend.slrm.Rd: spatstat.options
  envelope.Rd: envelope.pp3, envelope.envelope, rlabel, mad.test,
    plot.envelope, rmh, with.fv, plot.fv, pool.envelope, fv.object,
    lohboot, varblock, Kest, Gest, pcf, dclf.test, Fest, Jest, ppp,
    default.expand
  formula.ppm.Rd: as.owin
  harmonise.msr.Rd: harmonise
  influence.ppm.Rd: as.owin, domain, shift, Smooth
  intensity.ppm.Rd: intensity, intensity.ppp
  intensity.slrm.Rd: intensity
  is.marked.ppm.Rd: is.marked, is.marked.ppp
  is.multitype.ppm.Rd: is.multitype, is.multitype.ppp
  is.stationary.ppm.Rd: is.marked
  kppm.Rd: rVarGamma, rLGCP, Kest, Kinhom, pcf, pcfinhom, rCauchy
  leverage.ppm.Rd: as.owin, domain, Smooth
  lgcp.estK.Rd: Kest
  lgcp.estpcf.Rd: pcf.ppp, pcf
  logLik.ppm.Rd: as.owin
  matclust.estK.Rd: Kest, rMatClust
  matclust.estpcf.Rd: pcf.ppp, pcf, rMatClust
  methods.fii.Rd: reach
  mincontrast.Rd: fv.object, Kest
  model.images.Rd: spatstat.options, hyperframe, im, im.object,
    plot.solist
  mppm.Rd: hyperframe, lme
  msr.Rd: quadscheme
  panel.contour.Rd: contour.im, plot.im, pairs.im, density.ppp
  parres.Rd: rhohat, rho2hat
  plot.dppm.Rd: plot.fv
  plot.influence.ppm.Rd: plot.ppp
  plot.kppm.Rd: plot.fv, clusterfield, plot.im
  plot.leverage.ppm.Rd: plot.im, contour.im, persp.im
  plot.mppm.Rd: plot.anylist, plot.listof
  plot.msr.Rd: Smooth.ppp, plot.im, plot.ppp
  plot.plotppm.Rd: plot.ppp, spatstat.options
  plot.ppm.Rd: spatstat.options
  plot.rppm.Rd: plot.im
  plot.slrm.Rd: plot.im
  ppm.Rd: im.object, as.function.tess, ppp, quadscheme
  ppm.object.Rd: as.owin, berman.test, envelope, is.marked,
    is.multitype, is.poisson, is.stationary, cdf.test, quadrat.test,
    reach, rmhmodel, rmh, unitname
  ppm.ppp.Rd: gam.control, rmh, im.object, quad.object, ppp.object,
    default.dummy, quadscheme, pixelquad, rescale, ppp
  predict.mppm.Rd: hyperframe
  predict.ppm.Rd: spatstat.options, im.object
  predict.slrm.Rd: pixellate
  psst.Rd: quadscheme, fv.object
  psstA.Rd: quadscheme, fv.object, spatstat.options
  psstG.Rd: quadscheme, fv.object
  qqplot.ppm.Rd: rmh, rmh.default, envelope, rmhcontrol
  quad.ppm.Rd: quad.object
  quadrat.test.Rd: quadratcount, as.tess, quadrat.test.splitppp,
    quadrats, quadratresample, cdf.test
  quadrat.test.mppm.Rd: quadratcount, quadrat.test
  reach.Rd: rStrauss
  relrisk.ppm.Rd: relrisk, relrisk.ppp
  residuals.ppm.Rd: quadscheme
  rhohat.Rd: intensity.quadratcount, quadratcount, rho2hat,
    methods.rhohat
  rmh.ppm.Rd: rmhstart, rmhcontrol, rmh.default, rmh,
    update.rmhcontrol, default.rmhcontrol, rpoispp, rmpoispp, rpoint,
    rmpoint, ppp.object, rmhmodel
  rmhmodel.ppm.Rd: rmhcontrol, rmhmodel, rmh, as.owin, rmhmodel.list,
    rmhmodel.default, rmhstart
  roc.Rd: auc
  simulate.dppm.Rd: as.boxx
  simulate.kppm.Rd: rThomas, rMatClust, rCauchy, rVarGamma, rLGCP
  simulate.ppm.Rd: rmhstart, rmhcontrol, rmh.default
  simulate.slrm.Rd: rpoispp
  split.msr.Rd: split.ppp
  thomas.estK.Rd: Kest, rThomas
  thomas.estpcf.Rd: pcf.ppp, pcf, rThomas
  unitname.Rd: rescale, compatible, owin, ppp
  unstack.msr.Rd: unstack.ppp
  vargamma.estK.Rd: Kest, rVarGamma
  vargamma.estpcf.Rd: pcf.ppp, pcf, rVarGamma
  vcov.ppm.Rd: quadscheme.logi
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [119s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [114s] OK
  Running 'testsAtoC.R' [2s]
  Running 'testsD.R' [9s]
  Running 'testsEtoF.R' [5s]
  Running 'testsGtoJ.R' [2s]
  Running 'testsK.R' [5s]
  Running 'testsL.R' [41s]
  Running 'testsM.R' [5s]
  Running 'testsNtoO.R' [2s]
  Running 'testsP1.R' [2s]
  Running 'testsP2.R' [10s]
  Running 'testsQ.R' [2s]
  Running 'testsR1.R' [3s]
  Running 'testsR2.R' [13s]
  Running 'testsS.R' [2s]
  Running 'testsT.R' [4s]
  Running 'testsUtoZ.R' [5s]
* checking PDF version of manual ... [44s] OK
* checking HTML version of manual ... [71s] OK
* DONE
Status: 2 NOTEs