* using log directory 'd:/Rcompile/CRANpkg/local/4.5/spatstat.explore.Rcheck' * using R Under development (unstable) (2024-07-14 r86899 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'spatstat.explore/DESCRIPTION' ... OK * this is package 'spatstat.explore' version '3.2-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'spatstat.explore' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking whether startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [50s] OK * checking Rd files ... [9s] OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Emark.Rd: as.ppp F3est.Rd: spatstat.options, pp3 Fest.Rd: as.ppp, ppp.object, as.owin Finhom.Rd: as.ppp FmultiInhom.Rd: [.ppp G3est.Rd: pp3 Gcross.Rd: as.ppp Gdot.Rd: as.ppp Gest.Rd: as.ppp, ppp.object, as.owin, nndist, nnwhich Ginhom.Rd: as.ppp Gmulti.Rd: as.ppp GmultiInhom.Rd: [.ppp Hest.Rd: distmap Iest.Rd: as.ppp, ppp.object Jcross.Rd: as.ppp Jdot.Rd: as.ppp Jest.Rd: as.ppp, ppp.object Jinhom.Rd: as.ppp Jmulti.Rd: as.ppp K3est.Rd: pp3 Kcross.Rd: as.ppp Kcross.inhom.Rd: as.ppp Kdot.Rd: as.ppp Kdot.inhom.Rd: as.ppp Kest.Rd: as.ppp, ppp.object, as.owin Kest.fft.Rd: as.ppp, spatstat.options Kinhom.Rd: as.ppp Kmark.Rd: as.ppp Kmeasure.Rd: as.ppp, integral.im, im.object, spatstat.options Kmulti.Rd: as.ppp Kmulti.inhom.Rd: as.ppp Kscaled.Rd: as.ppp Ksector.Rd: as.ppp Lest.Rd: as.ppp Linhom.Rd: as.ppp Smooth.ppp.Rd: ppp.object, nnmark, im.object Smoothfun.ppp.Rd: as.im Tstat.Rd: as.ppp Window.quadrattest.Rd: Window, owin.object, Window.ppp, Window.psp adaptive.density.Rd: im.object allstats.Rd: plot.solist as.owin.quadrattest.Rd: owin.object, rmh, layered as.tess.Rd: quadratcount, tess blur.Rd: interp.im bw.frac.Rd: as.owin cdf.test.Rd: ewcdf clarkevans.Rd: nndist compatible.fasp.Rd: compatible compatible.fv.Rd: compatible density.ppp.Rd: pixellate.ppp, ppp.object, im.object density.psp.Rd: pixellate.psp, psp.object, im.object density.splitppp.Rd: split.ppp, ppp.object, im.object densityAdaptiveKernel.splitppp.Rd: split.ppp densityVoronoi.Rd: as.im, dirichlet, im.object densityfun.Rd: as.im, as.ppp distcdf.Rd: as.im, setcov, imcov domain.quadrattest.Rd: Window, Frame edge.Trans.Rd: overlap.owin, setcov envelope.Rd: rlabel, rmh, ppp, default.expand envelope.pp3.Rd: pp3, rpoispp3 fryplot.Rd: as.ppp harmonise.fv.Rd: harmonise hopskel.Rd: nndist, nncross idw.Rd: ppp.object, im.object, nnmark markconnect.Rd: as.ppp markcorr.Rd: as.ppp markcrosscorr.Rd: as.ppp markmarkscatter.Rd: plot.ppp, colourmap, symbolmap marktable.Rd: markstat, applynbd, ppp.object markvario.Rd: as.ppp miplot.Rd: as.ppp, quadratcount nnclean.Rd: nndist, split.ppp, cut.ppp nncorr.Rd: is.marked.ppp nndensity.Rd: nnmap, intensity pairs.im.Rd: plot.im, im panel.contour.Rd: contour.im, plot.im pcf.ppp.Rd: as.owin, closepairs pcf3est.Rd: pp3 pcfinhom.Rd: closepairs plot.fv.Rd: spatstat.options plot.laslett.Rd: plot.solist, plot.owin, plot.im, plot.ppp plot.quadrattest.Rd: plot.tess, plot.quadratcount plot.scan.test.Rd: plot.im pool.anylist.Rd: anylist quadrat.test.Rd: quadratcount, as.tess, quadrats, quadratresample quadrat.test.splitppp.Rd: quadratcount, quadrats, quadratresample quantile.density.Rd: quantile.ewcdf radcumint.Rd: shift.owin rat.Rd: compatible rectcontact.Rd: rectdistmap relrisk.ppp.Rd: eval.im rhohat.Rd: intensity.quadratcount, quadratcount rotmean.Rd: shift.owin segregation.test.Rd: rlabel spatcov.Rd: imcov, setcov spatialcdf.Rd: ewcdf spatstat.explore-deprecated.Rd: im.apply stieltjes.Rd: ewcdf stienen.Rd: plot.ppp, nndist transect.im.Rd: im varblock.Rd: tess, quadrats Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... [92s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [52s] OK Running 'testsAtoC.R' [3s] Running 'testsD.R' [10s] Running 'testsEtoF.R' [8s] Running 'testsGtoJ.R' [3s] Running 'testsK.R' [2s] Running 'testsL.R' [2s] Running 'testsM.R' [2s] Running 'testsNtoO.R' [2s] Running 'testsP1.R' [2s] Running 'testsP2.R' [2s] Running 'testsQ.R' [2s] Running 'testsR1.R' [2s] Running 'testsR2.R' [2s] Running 'testsS.R' [7s] Running 'testsT.R' [2s] Running 'testsUtoZ.R' [2s] * checking PDF version of manual ... [57s] OK * checking HTML version of manual ... [72s] OK * DONE Status: 1 NOTE