assay_bundle            Construct a reproducible scientific export
                        bundle
assay_preferences       Set explicit laboratory preferences for
                        candidate comparison
assay_scene             Extract auditable coordinate features from an
                        assay result
assay_tables            Extract exact scientific tables for all
                        retained assay candidates
band_scene              Extract separate theoretical size lanes from
                        validated assay/profile objects
compare_profiles        Compare visible fragment-size sets under a
                        disclosed arithmetic heuristic
design_arms             Design conventional ARMS primers for two
                        separate allele-specific reactions
design_caps             Design bounded natural CAPS candidates with
                        conserved flanking primers
design_dcaps            Design single-substitution derived CAPS
                        candidates on either primer strand
design_tetra_arms       Design bounded tetra-primer ARMS candidates
digest_fragments        Split a linear strand axis at complete-digest
                        cut boundaries
draw_scene              Draw a source-linked scientific scene using
                        base R graphics
evaluate_primer         Evaluate an unambiguous primer and its
                        perfect-match duplex
export_assay            Export a bundle as exact tables, full RDS,
                        methods and selected figures
export_scene            Export a scene using supported local R devices
find_binding_sites      Find ungapped primer-compatible sites on both
                        template strands
find_hairpins           Enumerate sequence-compatible hairpin stems
fragment_profiles       Construct conditional biallelic fragment
                        mixtures
group_bands             Group theoretical sizes without discarding
                        fragment multiplicity
primer_interactions     Screen ungapped antiparallel primer
                        complementarity
rank_assays             Rank retained assays with fully disclosed
                        preference penalties
read_locus              Import a single locus from DNA or FASTA text
reconstruct_amplicon    Reconstruct both ideal mature products with at
                        most one primer substitution
replay_assay            Rerun the saved design request with installed R
                        functions
restriction_enzymes     Retrieve the curated initial restriction-enzyme
                        facts
restriction_sites       Find every supported restriction recognition
                        site
reverse_complement      Reverse-complement validated uppercase DNA
run_app                 Launch the offline SNPAssayR interface
screen_primer_pair      Screen primer-pair products on a target and
                        supplied related copies
simulate_digest         Simulate theoretical complete digestion of a
                        canonical linear product
snpassay_app            Create the offline SNPAssayR Shiny application
validate_snp            Validate one biallelic SNP in a locus
