detect_complex_types    Detect Complex Types in DuckDB Table
duckdb_type_mappings    DuckDB to R Type Mappings
duckhts_bootstrap       Bootstrap the duckhts extension sources into
                        the R package
duckhts_build           Build the duckhts DuckDB extension
duckhts_load            Load the duckhts extension into a DuckDB
                        connection
extract_array_element   Extract Array Elements Safely
extract_map_data        Extract MAP Keys and Values
normalize_tabix_types   Normalize R Data Types to DuckDB Types for
                        Tabix
rduckhts_bam            Create SAM/BAM/CRAM Table
rduckhts_bam_bed_coverage
                        Native BAM/CRAM BED Regional Coverage Summary
rduckhts_bam_bin_counts
                        Native Fixed-Width BAM/CRAM Bin Counts
rduckhts_bam_convert_parquet
                        Convert SAM/BAM/CRAM reader output to Parquet
                        with DuckHTS metadata
rduckhts_bam_index      Build BAM or CRAM Index
rduckhts_bam_multi      Read multiple BAM/SAM files into a DuckDB table
rduckhts_bcf            Create VCF/BCF Table
rduckhts_bcf_convert_parquet
                        Convert VCF/BCF reader output to Parquet with
                        DuckHTS metadata
rduckhts_bcf_index      Build VCF or BCF Index
rduckhts_bcf_multi      Read multiple VCF/BCF files into a DuckDB table
rduckhts_bcftools_norm
                        Normalize Variant Alleles with bcftools-style
                        Semantics
rduckhts_bed            Create BED Table
rduckhts_bed_multi      Read multiple BED files into a DuckDB table
rduckhts_bgunzip        BGZF Decompress a File
rduckhts_bgzip          BGZF Compress a File
rduckhts_detect_quality_encoding
                        Detect FASTQ Quality Encoding
rduckhts_fasta          Create FASTA Table
rduckhts_fasta_index    Build FASTA Index
rduckhts_fasta_multi    Read multiple FASTA files into a DuckDB table
rduckhts_fasta_nuc      Compute FASTA Interval Nucleotide Composition
rduckhts_fastq          Create FASTQ Table
rduckhts_fastq_multi    Read multiple FASTQ files into a DuckDB table
rduckhts_functions      List DuckHTS Extension Functions
rduckhts_gff            Create GFF3 Table
rduckhts_gff_convert_parquet
                        Convert GFF3 reader output to Parquet with
                        DuckHTS metadata
rduckhts_gff_multi      Read multiple GFF files into a DuckDB table
rduckhts_gtf            Create GTF Table
rduckhts_gtf_multi      Read multiple GTF files into a DuckDB table
rduckhts_hts_header     Read HTS Header Metadata
rduckhts_hts_index      Read HTS Index Metadata
rduckhts_hts_index_raw
                        Read Raw HTS Index Blob
rduckhts_hts_index_spans
                        Read HTS Index Spans
rduckhts_liftover       Lift Over Variant Coordinates Against a Query
rduckhts_load           Load DuckHTS Extension
rduckhts_mosdepth       Native mosdepth-Compatible Coverage Outputs
rduckhts_munge          Munge Summary Statistics Rows
rduckhts_pileup         Create BAM Pileup Table
rduckhts_samtools_idxstats
                        samtools idxstats-Compatible Alignment Summary
rduckhts_score          Compute Polygenic Scores
rduckhts_simd_backend   DuckHTS SIMD backend diagnostics
rduckhts_tabix          Create Tabix-Indexed File Table
rduckhts_tabix_convert_parquet
                        Convert generic tabix reader output to Parquet
                        with DuckHTS metadata
rduckhts_tabix_index    Build Tabix Index
rduckhts_tabix_multi    Read multiple tabix-indexed files into a DuckDB
                        table
setup_hts_env           Setup HTSlib Environment
