8939b5f1c74962b47c406be11e5744d9 *CITATION
824db34862334e2d42bde532b62e45d3 *DESCRIPTION
18a04506373f69caa784d3df77337e9f *INDEX
bc1f4d46ed160309561968727add3956 *LICENSE
71b9bcba7367ff044d1c5e85a556ad46 *Meta/Rd.rds
e87c3f691015d444aa0843a72351d712 *Meta/data.rds
a5220c8fcf5a4598725b33188e4524d9 *Meta/features.rds
fb01f36129548f5997077be0e3075e26 *Meta/hsearch.rds
efe3afe154dfe6b57776b0c14c5501ce *Meta/links.rds
796939b7938de96a340b5f4bf41a01dc *Meta/nsInfo.rds
52ff0061d3cea220e947578c2a46679b *Meta/package.rds
3e6cff9c3bc5011437c452dbf96d07d8 *Meta/vignette.rds
f3fd9ae22efff9d183ddcf4d9df4ae3b *NAMESPACE
b1813a7329bd40227de3858719873455 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/lineagefreq
7f3c0db1efc60097e91cf8aa7ffdea3c *R/lineagefreq.rdb
7a5e8c15c8c7a4b3837f5c911157f5c7 *R/lineagefreq.rdx
edbeaef99b3ee8d3163faf42a66fa71a *WORDLIST
c5baeff3aac860127d00ae484ec45db5 *data/Rdata.rdb
c3368d3c002676ab23237efe40e05fe7 *data/Rdata.rds
fb16ed4e9349ca4a07b2f2f04854b422 *data/Rdata.rdx
45b726df0292bc64ac8033dbb170f69c *doc/index.html
368f3d01d8c5d4c650a8d8b60b2fbf7b *doc/introduction.R
f2f6e2c4c789b60f2c9c87e976ef9776 *doc/introduction.Rmd
c815e6a16a8e46a3b90c285f42dff759 *doc/introduction.html
6a2f27b9ecb3e3a7d31908db6c6e4216 *doc/model-comparison.R
2ba8421724bc3c2a73fc3ea924857647 *doc/model-comparison.Rmd
0089f2c7b3822ec97f06853434832dcf *doc/model-comparison.html
828f3950304b37c7cd9c6c82449e99fe *doc/real-data-analysis.R
cdf5c93d447980088d2468303d3a2cb9 *doc/real-data-analysis.Rmd
4d4506e853cc42f3659fe60a31a8ffcc *doc/real-data-analysis.html
a28ddd8bbd4efcf1b7800b4055e30056 *doc/surveillance-workflow.R
548f718d9c4720187f6be28d0329fcfb *doc/surveillance-workflow.Rmd
df2d34f46e352686ccff71916b5016d3 *doc/surveillance-workflow.html
4a212268a72a0916937e12471ee42653 *extdata/example_counts.csv
5b894a015ab9bfaa8db89ea320ff55fd *help/AnIndex
c0829dedbae401df4db549908c48b02b *help/aliases.rds
78756c0df993d5a6c7753966e5e925b7 *help/figures/ba2_dynamics.png
66c6928d109419311ae71fb7b597d180 *help/figures/backtest_plot.png
080250d6b8b6dfb092ffa7507375c618 *help/figures/before_after.png
6422be7a87fa3c7dbfbb169aefdfdec8 *help/figures/forecast_plot.png
8afa737cd0c8143b47406b47c9aaf70b *help/figures/growth_advantage_comparison.png
c185be355fbf47dd3a0b221c9d6bb40d *help/figures/jn1_dynamics.png
7cf9f019c97d0083cd36a71f1ae168d1 *help/figures/trajectory_plot.png
937d3faa14b4f301f4f1f2596d54b28c *help/lineagefreq.rdb
0b7be9bb6d598ef4daf989f1a281bc89 *help/lineagefreq.rdx
89fd272b3d7ead1f34a1f5dab35ca44f *help/paths.rds
fe21af1754cf3d14dbe825c8312a285a *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
5391741884198bfbefa1f86ceb2ac16c *stan/fga.stan
a61b9aa456c4d88e951d5ee990fe7579 *stan/garw.stan
