* using log directory 'd:/Rcompile/CRANpkg/local/4.3/betareg.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'betareg/DESCRIPTION' ... OK * this is package 'betareg' version '3.2-1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'betareg' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 12.3.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [1s] OK * checking startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [18s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [37s] OK * checking differences from 'betareg-Ex.Rout' to 'betareg-Ex.Rout.save' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [17s] OK Running 'betamix.R' [10s] Comparing 'betamix.Rout' to 'betamix.Rout.save' ... OK Running 'betatree.R' [3s] Comparing 'betatree.Rout' to 'betatree.Rout.save' ... OK Running 'bias.R' [2s] Comparing 'bias.Rout' to 'bias.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... [25s] OK 'betareg-ext.qmd' using 'UTF-8'... [16s] OK 'betareg.qmd' using 'UTF-8'... [7s] OK * checking re-building of vignette outputs ... [34s] ERROR Error(s) in re-building vignettes: --- re-building 'betareg-ext.qmd' using html processing file: betareg-ext.qmd Error in `flexmix::stepFlexmix()`: ! no convergence to a suitable mixture Backtrace: 1. betareg::betamix(...) 2. flexmix::stepFlexmix(...) Quitting from lines 1152-1155 [ReadingSkills-mix] (betareg-ext.qmd) Execution halted Error: processing vignette 'betareg-ext.qmd' failed with diagnostics: ✖ Error running quarto cli. Caused by error: ! System command 'quarto.exe' failed --- failed re-building 'betareg-ext.qmd' --- re-building 'betareg.qmd' using html processing file: betareg.qmd output file: betareg.knit.md pandoc to: html output-file: betareg.html standalone: true embed-resources: true wrap: none default-image-extension: png css: - >- D:/RCompile/CRANpkg/lib/4.3/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css html-math-method: mathjax toc: true number-sections: true metadata document-css: false lang: en minimal: true theme: none title: Beta Regression in R author: - name: Francisco Cribari-Neto affiliation: Universidade Federal de Pernambuco address: Brazil orcid: 0000-0002-5909-6698 email: cribari@ufpe.br url: 'https://www.de.ufpe.br/~cribari/' - name: Achim Zeileis affiliation: Universität Innsbruck address: Austria orcid: 0000-0003-0918-3766 email: Achim.Zeileis@R-project.org url: 'https://www.zeileis.org/' abstract: | This introduction to the R package **betareg** is a (slightly) modified version of @betareg:Cribari-Neto+Zeileis:2010, published in the _Journal of Statistical Software_. A follow-up paper with various extensions is @betareg:Gruen+Kosmidis+Zeileis:2012 -- a slightly modified version of which is also provided within the package as `vignette("betareg-ext", package = "betareg")`\ The class of beta regression models is commonly used by practitioners to model variables that assume values in the standard unit interval $(0, 1)$. It is based on the assumption that the dependent variable is beta-distributed and that its mean is related to a set of regressors through a linear predictor with unknown coefficients and a link function. The model also includes a precision parameter which may be constant or depend on a (potentially different) set of regressors through a link function as well. This approach naturally incorporates features such as heteroskedasticity or skewness which are commonly observed in data taking values in the standard unit interval, such as rates or proportions. This paper describes the **betareg** package which provides the class of beta regressions in the R system for statistical computing. The underlying theory is briefly outlined, the implementation discussed and illustrated in various replication exercises. bibliography: - betareg.bib vignette: | %\VignetteIndexEntry{Beta Regression in R} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8} %\VignetteDepends{stats,betareg,car,lmtest,sandwich,strucchange} %\VignetteKeywords{beta regression, rates, proportions, R} %\VignettePackage{betareg} [WARNING] Could not fetch resource https://polyfill.io/v3/polyfill.min.js?features=es6: HttpExceptionRequest Request { host = "polyfill.io" port = 443 secure = True requestHeaders = [] path = "/v3/polyfill.min.js" queryString = "?features=es6" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } (ConnectionFailure user error (Network.Socket.gai_strerror not supported: 11001)) Output created: betareg.html --- finished re-building 'betareg.qmd' SUMMARY: processing the following file failed: 'betareg-ext.qmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR