Tidyverse-Style Operations on Matrices with Row and Column Metadata

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Documentation for package ‘tidymatrix’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

activate	Activate different components of a tidymatrix
active	Get the active component of a tidymatrix
add_stats	Add statistics to metadata
analysis-management	Analysis Management for tidymatrix
anti_join.tidymatrix	Join tidymatrix with another data frame
arrange.tidymatrix	Arrange the active component of a tidymatrix
as.data.frame.tidymatrix	Convert tidymatrix metadata to data.frame
as_tibble.tidymatrix	Convert tidymatrix metadata to tibble
big5	Simulated Big Five personality survey
big5_countries	Country information for the Big Five survey
big5_items	Simulated Big Five personality survey
big5_respondents	Simulated Big Five personality survey
big5_responses	Simulated Big Five personality survey
center	Center the active dimension of an object
center.tidymatrix	Center rows or columns
check_analyses	Check analysis validity
clip_values	Clip matrix values
compute_across	Apply a function across matrix dimensions with metadata access
compute_anova	Convenience wrapper for ANOVA
compute_correlation	Convenience wrapper for correlation tests
compute_hclust	Compute hierarchical clustering on tidymatrix
compute_kmeans	Compute k-means clustering on tidymatrix
compute_kruskal	Convenience wrapper for Kruskal-Wallis test
compute_lm	Convenience wrapper for linear models
compute_lm_simple	Convenience wrapper for simple linear regression
compute_mds	Compute MDS on tidymatrix
compute_prcomp	Compute PCA on tidymatrix
compute_tsne	Compute t-SNE on tidymatrix
compute_ttest	Convenience wrapper for t-tests
compute_umap	Compute UMAP on tidymatrix
compute_wilcox	Convenience wrapper for Wilcoxon rank-sum test
count.tidymatrix	Count observations by group
filter.tidymatrix	Filter rows or columns of a tidymatrix
full_join.tidymatrix	Join tidymatrix with another data frame
get_analysis	Get stored analysis object
groups.grouped_tidymatrix	Get grouping variables
group_by.tidymatrix	Group a tidymatrix by variables in metadata
group_vars.grouped_tidymatrix	Get grouping variable names
inner_join.tidymatrix	Join tidymatrix with another data frame
is_grouped_tidymatrix	Check if object is a grouped tidymatrix
is_tidymatrix	Check if an object is a tidymatrix
joins	Join tidymatrix with another data frame
left_join.tidymatrix	Join tidymatrix with another data frame
list_analyses	List stored analyses
log_transform	Log transform matrix
matrix-operations	Matrix Operations for tidymatrix
mutate.tidymatrix	Mutate the active component of a tidymatrix
plot_pheatmap	Create a pheatmap from tidymatrix
print.grouped_tidymatrix	Print a grouped tidymatrix
print.tidymatrix	Print a tidymatrix object
pull.tidymatrix	Extract a column from metadata as a vector
pull_active	Extract the active component from a tidymatrix
relocate.tidymatrix	Relocate columns in metadata
remove_analysis	Remove stored analysis
rename.tidymatrix	Rename columns in metadata
right_join.tidymatrix	Join tidymatrix with another data frame
scale.tidymatrix	Scale rows or columns
select.tidymatrix	Select columns from row or column metadata
semi_join.tidymatrix	Join tidymatrix with another data frame
slice.tidymatrix	Slice rows or columns by position
slice_head.tidymatrix	Select first or last rows/columns
slice_sample.tidymatrix	Select a random sample of rows/columns
slice_tail.tidymatrix	Select first or last rows/columns
summarise.grouped_tidymatrix	Summarize grouped tidymatrix
summarize.grouped_tidymatrix	Summarize grouped tidymatrix
t.tidymatrix	Transpose a tidymatrix
tally.grouped_tidymatrix	Count observations in groups
tidymatrix	Create a tidymatrix object
to_long	Convert tidymatrix to long-format data.frame
transform_matrix	Apply a function to the matrix
ungroup.grouped_tidymatrix	Remove grouping from a grouped tidymatrix