Package: sclValid
Title: Ensemble Validation and Ranking of Clustering Methods
Version: 0.1.0
Authors@R: 
    c(
      person(
        given = "Owen",
        family = "Visser",
        role = c("aut", "cre"),
        email = "owviss@gmail.com"
      ),
      person(
        given = "Justina",
        family = "Žurauskienė",
        role = "ctb",
        comment = "pcaReduce compatibility code adapted from the pcaReduce package"
      ),
      person(
        given = "Christopher",
        family = "Yau",
        role = "ctb",
        comment = "pcaReduce compatibility code adapted from the pcaReduce package"
      )
    )
Description: Provides tools for clustering, validation, and ranking of single-cell RNA sequencing data. The package implements multiple clustering approaches, a collection of internal, external, and stability-based validation measures, and rank aggregation for comparing clustering solutions. User-defined clustering functions can also be incorporated into the validation framework. Methods are based in part on Visser and Datta (2025) <doi:10.1002/sim.70331>.
License: GPL (>= 3)
Encoding: UTF-8
Config/roxygen2/version: 8.1.0
Depends: R (>= 3.5)
LazyData: true
Imports: cccd, cli, clue, igraph, mclust, mnormt, pcaMethods, RaceID,
        RankAggreg, Rcpp, Rtsne, S4Vectors, SingleCellExperiment,
        SummarizedExperiment
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2026-09-01 13:18:10 UTC; owvis
Author: Owen Visser [aut, cre],
  Justina Žurauskienė [ctb] (pcaReduce compatibility code adapted from
    the pcaReduce package),
  Christopher Yau [ctb] (pcaReduce compatibility code adapted from the
    pcaReduce package)
Maintainer: Owen Visser <owviss@gmail.com>
Repository: CRAN
Date/Publication: 2026-09-12 09:40:08 UTC
Built: R 4.6.1; x86_64-apple-darwin20; 2026-09-12 11:52:27 UTC; unix
Archs: sclValid.so.dSYM
