Rumen Gas Production Modeling, Comparison, and Visualization

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Documentation for package ‘rumenGP’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_rumen_gp	Convert data to a rumen_gp object
best_model_by_treatment	Identify the Best Model for Each Treatment
compare_models	Compare Fitted Kinetic Models
compare_models_by_treatment	Compare Models by Treatment
example_data	Example ANKOM Data
exclude_heads	Exclude Problematic ANKOM Heads
fit_brody	Fit Brody model
fit_custom	Fit Custom Nonlinear Model
fit_dual_logistic	Fit dual-pool logistic model
fit_exp0	Fit exponential model without lag (EXP0)
fit_expl	Fit exponential model with lag (EXPL)
fit_gompertz	Fit Gompertz model
fit_groot	Fit Groot model
fit_le0	Fit Logistic-Exponential model (LE0)
fit_lel	Fit Logistic-Exponential model (LEL)
fit_logistic	Fit Logistic model
fit_mitscherlich	Fit Mitscherlich model
fit_mm	Fit Michaelis-Menten model
fit_orskov	Fit Orskov and McDonald model
flag_model	Flag potentially problematic model fits
model_win_frequency	Model Win Frequency
parse_ankom_time	Parse ANKOM Timestamps
plot_all_fits	Plot All Fitted Curves
plot_all_treatment_means	Plot Treatment Means for All Treatments
plot_diagnostics	Plot Diagnostic Summaries
plot_dual_pools	Plot Dual-Pool Logistic Decomposition
plot_fit	Plot Fitted Model
plot_gp	Plot Raw Gas Production Curve
plot_model_comparison	Compare Model Fits
plot_model_comparison_all	Compare Models for All Bottles
plot_model_comparison_treatment	Compare Models for a Treatment
plot_model_performance	Plot Model Performance
plot_model_rankings	Plot Model Rankings
plot_residuals	Plot Model Residuals
plot_residual_comparison	Compare Residuals Across Models
plot_treatment_mean	Plot Treatment Means Across Models
pressure_to_volume	Convert Pressure to Gas Volume
process_ankom	Process ANKOM RF Data
rank_models	Rank Models
rank_models_by_treatment	Rank Models Within Each Treatment
read_ankom	Import ANKOM RF Output
read_metadata	Import Metadata
summary.brody_fit	Summary of Brody Fits
summary.custom_fit	Summary of Custom Model Fits
summary.dual_logistic_fit	Summary of Dual Logistic Fits
summary.exp0_fit	Summary of EXP0 Fits
summary.expl_fit	Summary of EXPL Fits
summary.gompertz_fit	Summary of Gompertz Fits
summary.groot_fit	Summary of Groot Fits
summary.le0_fit	Summary of LE0 Fits
summary.lel_fit	Summary of LEL Fits
summary.logistic_fit	Summary of Logistic Fits
summary.mitscherlich_fit	Summary of Mitscherlich Fits
summary.mm_fit	Summary of Michaelis-Menten Fits
summary.orskov_fit	Summary of Orskov and McDonald Fits
validate_ankom	Validate Processed Rumen Gas Production Data
validate_metadata	Validate Metadata