Categorical Mask and Spatial Label Refinement
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Documentation for package ‘fibermargin’ version 0.1.0
Help Pages
| available_spatial_benchmarks | List real spatial benchmark datasets |
| benchmark_spatial_refiners | Benchmark spatial label refinement methods |
| clean_categorical_mask | Clean a noisy categorical mask |
| colorectal_benchmark | Human CRC Visium HD refinement benchmark |
| corrupt_categorical_mask | Generate a corrupted categorical mask |
| dlpfc_benchmark | Human DLPFC Visium refinement benchmark |
| evaluate_mask_cleaning | Evaluate categorical mask cleaning |
| evaluate_spatial_refinement | Evaluate a spatial label refinement |
| load_spatial_benchmark | Load a bundled real spatial benchmark |
| refine_spatial_labels | Refine noisy categorical labels on a spatial domain |
| simulate_complex_spatial_domains | Simulate held-out complex spatial domain geometries |
| simulate_gradient_regions | Simulate layered gradient-mixture tissue regions |
| simulate_spatial_clusters | Simulate labelled spatial clusters |
| simulate_spatial_domains | Simulate spatial tissue domains with challenging geometry |
| simulate_volumetric_domains | Simulate complex three-dimensional tissue domains |
| spatial_benchmark | Construct a spatial refinement benchmark |