Ensemble Validation and Ranking of Clustering Methods

Documentation for package ‘sclValid’ version 0.1.0

check_input	Check Input Data
example_data	Example Single-Cell Expression Data
example_labels	Example Cell Labels
make_sce	Create a SingleCellExperiment Object
run_custom_clustering	Run a User-Defined Clustering Method
run_pcareduce	Run pcaReduce Clustering
run_raceid	Run RaceID Clustering
run_rank_aggregation	Rank Clustering Solutions
run_reduction_clustering	Run Clustering on PCA and t-SNE Representations
run_validation	Calculate Clustering Validation Measures
scale_validation	Scale Clustering Validation Measures
validation_apn	Calculate Average Proportion of Non-Overlap
validation_ari	Calculate Adjusted Rand Index
validation_average_distance	Calculate Average Distance
validation_average_distance_means	Calculate Average Distance Between Means
validation_bhi	Calculate Biological Homogeneity Index
validation_bsi	Calculate Biological Stability Index
validation_connectivity	Calculate Connectivity
validation_dunn	Calculate the Dunn Index
validation_igp	Calculate In-Group Proportion
validation_silhouette	Calculate Average Silhouette Width