add_intertidal_flag     Add an intertidal zone flag to a survey
                        dataframe
add_season_column       Detect season for each row in a dataframe
add_shellfish_classification
                        Add shellfish water quality classification to
                        scored result
add_suitability_ci      Add bootstrap confidence intervals to
                        suitability scores
analyse_connectivity    Analyse spatial connectivity of suitable
                        habitat cells
assess_gear_feasibility
                        Assess gear deployment feasibility at survey
                        locations
auto_tidal_correct      Automatically predict and apply tidal
                        correction from harmonic constituents
check_exclusions        Check exclusion criteria for all rows in a
                        dataset
classify_substrate_from_backscatter
                        Classify seabed substrate hardness from
                        near-seabed ADCP backscatter
compare_species         Compare suitability across multiple oyster
                        species
compare_surveys         Compare suitability scores across multiple
                        surveys or monitoring years
composite_seasonal      Combine multi-season survey results into a
                        composite suitability score
correct_to_chart_datum
                        Correct survey depths to Chart Datum (LAT)
detect_season           Detect meteorological season from date and
                        latitude
estimate_chlorophyll_from_backscatter
                        Estimate chlorophyll-a concentration from ADCP
                        acoustic backscatter
estimate_fetch          Estimate effective fetch from a set of lat/lon
                        points and a bearing
export_contours         Export optional contour lines as a GeoPackage
                        for QGIS
export_geotiff          Export suitability scores as a smooth
                        interpolated GeoTIFF heatmap for QGIS
export_qml_style        Export a QGIS colour style (.qml) matching the
                        BioBase orange/red heatmap
fetch_live_environmental_data
                        Fetch live environmental data for a survey
                        extent
generate_report         Generate a formatted survey report from
                        predict_oyster() results
generate_summary_pdf    Generate a compact printable PDF summary of
                        oystermapR results
get_species_tolerances
                        Get species tolerance parameters
get_tolerance_posteriors
                        Retrieve current posterior tolerance parameters
                        for a species
identify_resilient_sites
                        Identify climate-resilient locations
interpolate_survey      Interpolate survey measurements to a regular
                        grid before scoring
list_species            List all supported species
load_tolerance_update   Load saved Bayesian tolerance updates into
                        session cache
merge_sensor_data       Merge multiple sensor datasets into a single
                        survey table
oystermapR_help         Print an interactive getting-started guide for
                        oystermapR
oystermapR_live_config
                        Configure live data API credentials for
                        oystermapR
parse_opendrift_connectivity
                        Parse an OpenDrift particle tracking output
                        into a connectivity matrix
permutation_importance
                        Permutation variable importance for suitability
                        model
predict_oyster          Predict oyster growth suitability from
                        environmental survey data
project_suitability     Project suitability under future climate
                        scenarios
qc_survey_data          Run automated quality control on raw survey
                        data
read_aanderaa_csv       Read an Aanderaa RCM current meter CSV export
read_generic_csv        Read a generic sensor CSV with flexible column
                        mapping
read_nortek_adcp        Read and process a Nortek Signature 500 ADCP
                        CSV file
read_nortek_aquadopp    Read a Nortek Aquadopp Profiler ASCII export
read_rdi_adcp           Read a Teledyne RDI ADCP binary file (PD0
                        format)
read_sonar_tif          Read a bathymetric or sidescan GeoTIFF and
                        convert to oystermapR variables
read_soundings_xyz      Read a bathymetric XYZ point cloud and derive
                        depth, slope and roughness
reset_tolerance_update
                        Reset Bayesian tolerance updates for a species
save_tolerance_update   Save Bayesian tolerance updates to disk
score_anthropogenic_disturbance
                        Score anthropogenic disturbance at survey
                        locations
score_disease_risk      Score locations for disease and parasite risk
score_economic_viability
                        Score economic viability for aquaculture or
                        restoration
score_hab_risk          Score harmful algal bloom risk at survey
                        locations
score_larval_connectivity
                        Score larval dispersal connectivity at survey
                        locations
score_locations         Score all locations in a dataframe
score_predation_risk    Score predation and bioturbation pressure at
                        survey locations
score_sediment_stability
                        Score sediment stability and mobility at survey
                        locations
score_settlement        Score locations for spat settlement suitability
score_wave_exposure     Score wave exposure from fetch or measured wave
                        height
sensitivity_analysis    Partial dependence / sensitivity analysis for a
                        scored variable
smooth_suitability      Apply Gaussian kernel smoothing to suitability
                        scores
spatial_block_cv        Spatial block cross-validation for suitability
                        model evaluation
stack_surveys           Stack multiple survey runs from the same sensor
                        type
tidal_port_info         Look up approximate tidal range for major
                        European survey ports
update_species_tolerances
                        Update species tolerance parameters from field
                        observations (Bayesian)
validate_against_records
                        Validate suitability predictions against known
                        presence/absence records
