Access Open 'NeMO Archive' Datasets

Documentation for package ‘nemoR’ version 0.99.3

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nemo_access_types	List available file access categories
nemo_assays	List available assays
nemo_as_sce	Convert downloaded NeMO files to a SingleCellExperiment
nemo_as_seurat	Convert a SingleCellExperiment to a Seurat object
nemo_brain_regions	List available brain regions/anatomies
nemo_cache_dir	Get the nemoR cache directory
nemo_collection	Retrieve a NeMO collection
nemo_collections	List NeMO collections
nemo_data_types	List available file data types
nemo_download	Download files from a NeMO manifest
nemo_download_plan	Summarize a planned NeMO download
nemo_example_collections	Example public NeMO collection identifiers
nemo_facet_values	List available values for NeMO portal facets
nemo_fetch	Search NeMO and download matching files
nemo_file	Retrieve a NeMO file record
nemo_files	List files attached to a NeMO collection
nemo_file_formats	List available file formats
nemo_labs	List available labs
nemo_load	Load downloaded NeMO files into an analysis object
nemo_manifest	Build a reproducible NeMO file manifest
nemo_manifest_from_urls	Build a NeMO manifest from direct URLs
nemo_modalities	List available modalities
nemo_platforms	List available sequencing or assay platforms
nemo_project	Retrieve a NeMO project
nemo_read_10x_h5	Read a downloaded 10x Genomics HDF5 file
nemo_read_h5ad	Read a downloaded H5AD file as a SingleCellExperiment
nemo_read_manifest	Read a NeMO manifest
nemo_read_mtx	Read a Matrix Market count matrix directory
nemo_search	Search NeMO portal files, samples, or projects
nemo_search_fields	List searchable NeMO portal fields
nemo_search_manifest	Search NeMO and build a download-ready manifest
nemo_species	List available species or taxa in NeMO
nemo_studies	List available studies/grants
nemo_taxa	List available taxa
nemo_techniques	List available techniques
nemo_validate_manifest	Validate a NeMO manifest
nemo_write_manifest	Write a NeMO manifest