Distributional Regression Models Using Template Model Builder
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Documentation for package ‘drmTMB’ version 0.7.0
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A B C D E F I L M N P Q R S T V W Z
-- A --
| AIC.drmTMB | Extract standard model-fit quantities |
| animal | Animal-model structured-effect marker |
| anova.drmTMB | Likelihood comparison guard for drmTMB fits |
| associate_pairs | Associate two frozen marginal drmTMB fits |
| association | Extract a pair association estimate |
| association.drm_pair_association | Extract a pair association estimate |
-- B --
| beta | Beta response family |
| beta_binomial | Beta-binomial response family |
| bf | Build a drmTMB formula object |
| BIC.drmTMB | Extract standard model-fit quantities |
| biv_associate | Fit two margins and construct a frozen-margin association in one call |
| biv_gaussian | Bivariate Gaussian response family |
| biv_lognormal | Bivariate lognormal response family |
| biv_student | Bivariate Student-t response family |
-- C --
| categorical | Unordered categorical missing-predictor family |
| centile_chart | Model-conditional centile chart |
| centile_chart.drmTMB | Model-conditional centile chart |
| check_drm | Check convergence and diagnostic flags for a drmTMB fit |
| check_drm.drmTMB | Check convergence and diagnostic flags for a drmTMB fit |
| coef.drmTMB | Extract fixed-effect coefficients |
| confint.drmTMB | Confidence intervals for fitted model parameters |
| confint.drmTMB_julia | Inspect legacy interval output from a halted Julia bridge |
| confint.drm_pair_association | Confidence intervals for a frozen-margin association |
| corpair | Latent random-effect correlation formula marker |
| corpairs | Extract fitted correlation pairs |
| corpairs.drmTMB | Extract fitted correlation pairs |
| cumulative_logit | Cumulative logit ordinal response family |
-- D --
| deviance.drmTMB | Extract standard model-fit quantities |
| df.residual.drmTMB | Extract standard model-fit quantities |
| drmTMB | Fit a distributional regression model with TMB |
| drm_control | Control fitting and fitted-object storage |
| drm_formula | Build a drmTMB formula object |
| drm_phylo_penalty | Penalty / prior specification for a phylogenetic location-scale fit |
| drm_phylo_penalty_sweep | Prior-sensitivity sweep for the phylogenetic correlation penalty |
-- E --
| exceedance | Exceedance probability from a fitted model |
| exceedance.drmTMB | Exceedance probability from a fitted model |
-- F --
| fitted.drmTMB | Extract fitted response values |
| fitted_distribution | Fitted distribution accessor |
| fitted_distribution.drmTMB | Fitted distribution accessor |
| fixef | Extract fixed-effect coefficients |
| fixef.drmTMB | Extract fixed-effect coefficients |
-- I --
| imputed | Extract fitted missing-predictor summaries |
| imputed.drmTMB | Extract fitted missing-predictor summaries |
| impute_model | Define a missing-predictor model |
| is_converged | Check whether a fit converged |
| is_converged.default | Check whether a fit converged |
| is_converged.drmTMB | Check whether a fit converged |
-- L --
| latent_normal | Construct a latent-normal association kernel |
| logLik.drmTMB | Extract standard model-fit quantities |
| lognormal | Lognormal response family |
-- M --
| make_mesh | Construct a fixed-kappa SPDE mesh |
| marginal_parameters | Marginal summaries of predicted distributional parameters |
| marginal_parameters.drmTMB | Marginal summaries of predicted distributional parameters |
| meta_V | Known sampling covariance marker |
| meta_vcov_bivariate | Build paired bivariate sampling covariance |
| mi | Missing-predictor model marker |
| miss_control | Configure missing-data handling |
| model-fit-extractors | Extract standard model-fit quantities |
-- N --
| native_reader_contracts | Stable native reader contracts |
| nbinom2 | Negative binomial 2 response family |
| nobs.drmTMB | Extract standard model-fit quantities |
-- P --
| phylo | Phylogenetic structured-effect marker |
| phylo_interaction | Bipartite phylogenetic interaction marker |
| plot.profile.drmTMB | Plot profile-likelihood curves |
| plot_corpairs | Plot fitted correlation-pair summaries |
| plot_parameter_surface | Plot predicted distributional-parameter surfaces |
| predict.drmTMB | Predict distributional parameters |
| predict.drmTMB_julia | Predict from a legacy Julia-bridge 'drmTMB' fit |
| predict.drmTMB_julia_xfam | Predict from a legacy Julia-bridge 'drmTMB' fit |
| predict.drm_pair_association | Predict a frozen-margin pair association |
| prediction_grid | Build prediction grids for distributional-parameter summaries |
| prediction_grid.drmTMB | Build prediction grids for distributional-parameter summaries |
| predict_parameters | Predict distributional parameters in long format |
| predict_parameters.drmTMB | Predict distributional parameters in long format |
| profile.drmTMB | Compute profile-likelihood curves for fitted model targets |
| profile_targets | List confidence-interval targets for a fitted model |
-- Q --
| qq_plot | Normal QQ plot of randomized quantile residuals |
-- R --
| random_effect_scale_formulas | Random-effect scale formula syntax |
| ranef | Extract conditional random-effect estimates |
| ranef.drmTMB | Extract conditional random-effect estimates |
| relmat | User-supplied relatedness structured-effect marker |
| residuals.drmTMB | Extract model residuals |
| rho12 | Extract residual correlation rho12 |
| rho12.drmTMB | Extract residual correlation rho12 |
| rho_latent | Extract a latent-scale correlation from a legacy Julia-bridge fit |
-- S --
| sd | Random-effect scale formula syntax |
| sd1 | Random-effect scale formula syntax |
| sd2 | Random-effect scale formula syntax |
| sd_phylo | Random-effect scale formula syntax |
| sd_phylo1 | Random-effect scale formula syntax |
| sd_phylo2 | Random-effect scale formula syntax |
| sigma.drmTMB | Extract fitted scale or dispersion |
| simulate.drmTMB | Simulate from a fitted model |
| skew_normal | Skew-normal response family |
| spatial | Spatial structured-effect marker |
| spatial_coords | Transform longitude and latitude to planar spatial coordinates |
| structured_effects | Extract structured-effect metadata |
| structured_effects.default | Extract structured-effect metadata |
| structured_effects.drmTMB | Extract structured-effect metadata |
| student | Student-t response family |
| summary.drmTMB | Summarize a fitted model |
| summary.drmTMB_julia | Summarise a legacy Julia-bridge 'drmTMB' fit |
| summary.drmTMB_julia_xfam | Summary for a legacy Julia cross-family fit |
-- T --
| truncated_nbinom2 | Zero-truncated negative binomial 2 response family |
| tweedie | Tweedie response family |
-- V --
| vcov.drmTMB | Extract standard model-fit quantities |
| vcov.drmTMB_julia_xfam | Extractor unavailable for a legacy cross-family Julia fit |
| vcov.drm_pair_association | Alpha-scale covariance for a frozen-margin association |
-- W --
| weights.drmTMB | Extract likelihood weights |
| worm_plot | Worm plot of randomized quantile residuals |
-- Z --
| zero_one_beta | Zero-one beta response family |