addClustoData           Add ClustoCell cluster annotations to a Seurat
                        or SingleCellExperiment object
addTypoData             Add TypoClust cell type annotations to a
                        single-cell object
ceLLMarkup              LLM-based cell-type annotation of clusters or
                        marker sets (ceLLMarkup)
clustoCell              Clustering and marker discovery for single-cell
                        data using EWCSR-based similarity
clustoCell_TransferLabel
                        Transfer ClustoCell cluster labels to a
                        full-resolution dataset
ewcsr.sparse            Compute expression-weighted centered scaled
                        ranks (EWCSR)
featureInspect          Inspect the Membership of Features Across
                        ClustoCell Results
getDatasetMarkers       Collect marker genes from a ClustoCell object
gini.ewcsr.fs           Feature selection using Gini coefficient on
                        EWCSR-transformed data
gini.rank.fs            Feature selection using Gini coefficient on
                        ranked expression data
install_celliverse_agent
                        Prepare this machine to run the CelliVerse
                        agent
jaccard.sparse          Compute Jaccard similarity for sparse matrices
markerDB                Cell-type marker database
markerDictionary        Marker gene dictionary
markerPurity            Assess marker purity across clusters or cell
                        subsets
markoCell               Rank markers for clusters, cell subsets, or
                        individual cells
markoClust              Evaluate and refine cell clusters using marker
                        ranking and graph partitioning
markoClustVis           Visualize cluster and cell-subset markers
mutual.rank             Compute mutual rank from a similarity matrix
run_celliverse_agent    Launch the CelliVerse agent (API + UI)
saveTypoPrompt          Save a TypoPrompt to a file
signatureDotHeatmap     Visualize per-signature marker expression
                        across clusters
tissueCondition_types   Tissue and condition reference catalog
typoClust               Cell type annotation of clusters, sub-clusters,
                        or cell subsets
typoClustVis            Visualization of TypoClust cell-type
                        annotations
typoPrompt              Generate an LLM-ready prompt for cell-type
                        annotation
