bGMYC                   A Bayesian MCMC implementation of the general
                        mixed Yule-coalescent model for species
                        delimitation.
bgmyc.dataprep          Prepares a tree for analysis.
bgmyc.gibbs             MCMC sampler
bgmyc.lik               GMYC likelihood function
bgmyc.multiphylo        Multi-tree GMYC analysis
bgmyc.point             Returns a point estimate of species limits
                        based on a posterior probability threshold
                        input by the user.
bgmyc.prior             a function to return the prior probability of a
                        model.
bgmyc.singlephy         Single tree GMYC analysis.
bgmyc.spec              bGMYC output processing.
checkrates              bGMYC output processing.
east10                  10 trees sampled from a posterior distribution.
                        based on simulated data.
gmyc.5parameter.lik     5 parameter likelihood function.
plot.bgmycprobmat       Plots the matrix of probability of
                        conspecificity.
plot.bgmycrates         Plots relative coalescent and Yule rates for
                        model fit evaluation.
plot.interactive.probmat
                        Interactive Probability Matrix Plot for bGMYC
                        Results
plot.multibgmyc         Plot MCMC output.
plot.singlebgmyc        Plot MCMC output.
spec.probmat            Return matrix of probability of conspecificity.
